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The map label for this gene is lsrR [H]

Identifier: 238919159

GI number: 238919159

Start: 1223939

End: 1224901

Strand: Direct

Name: lsrR [H]

Synonym: NT01EI_1230

Alternate gene names: 238919159

Gene position: 1223939-1224901 (Clockwise)

Preceding gene: 238919158

Following gene: 238919161

Centisome position: 32.1

GC content: 52.02

Gene sequence:

>963_bases
ATGGAGAGGCAAAATGGAACGCTGGATGAACAATTATTGACCGAGATCGCCGTCGCATACTATCAAAATGATATTACACA
GCAGGAGATCGCGAAAAAATTTGGTATTTCACGGATTAAGGTCGGGCGGTTGCTGAAGCGAGCTAAAGAAGAGGGCATCG
TAGAGATTTCAGTACGCTACCATCCGGTATTCAGCACCCGGCTTGAACAGCAGCTGAAGGCGCATTTCCCGATTACCCGT
GCGTTAATTGCGCTGGATTGTCAGGATGAGGACGAGCAGCGGCGTCACGTTGCGGCGTTAGTCTTTAACCATCTCTCTAC
GGTACTCAGGGATGACATGGCGGTCGCCGTGGGGCAAGGCCGTAATGTGGCGGCCGTGGCTGGGCACGTCGGTAATGCCG
CTGAGCGTCGCTGCCGTTTTATCTGTGGCATCGGTGGCAACCATCGGCCCGGCGATGCGTTGAATGCTGACCATATTAGC
CGACGGTTGGCTAAAACGTTTGGGGGACGCAGTGAGACACTGTATGCGCCTGCGTATGTGGAAAACCGCACATTAAAAGA
AGCATTTATGCAGAATGGCACCATTAAAGATACGCTGGATCGCGCGCGTCGGGCGGATATCGCCTTAGTTGGCATTGGTG
ACATGAATGAAGATAGCTATATGGTGAAGCTTGGTTGGTTTACGCCGCGCGAGATTGTCGATGCCAGTCTGAATCAGGGC
GTGATCGGTGAAATTGGTGGCTATGATTTCTTTAACGCGCAGGGTATGCATGTGGATACCGTGATGAACGATCGCGTTAT
CGGCTTGAGTATTGATGAGTTACGTAATATTCCGTGCGTGATTGCCATAGCCGCAGAAAATAGCAAGGCCTTGGCTATTT
TGGGCGCGCTGCGGACGGGAGCCATTGACATCATTGCGACCAGTGCAGCCAATATTCGTACGCTGCTCAGCGTACTTGCA
TAG

Upstream 100 bases:

>100_bases
TTTTTTGTCAGACCATGCGATCTGCGTCTATACGATGGGATCCCCACGTGGGCTATGCTTATAGCCCACGACGGCAGACG
AGACAGGGTGTGTAGAGCAG

Downstream 100 bases:

>100_bases
GCGGTTATCCCGGGCACGGAGTCCCCCCATCTTGTTTCCCTGCATGTCGATGAATCAGCTCCGATAAAGCCATTTAATTT
ATATTTTTTATCCGGTTATT

Product: transcriptional regulator, DeoR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MERQNGTLDEQLLTEIAVAYYQNDITQQEIAKKFGISRIKVGRLLKRAKEEGIVEISVRYHPVFSTRLEQQLKAHFPITR
ALIALDCQDEDEQRRHVAALVFNHLSTVLRDDMAVAVGQGRNVAAVAGHVGNAAERRCRFICGIGGNHRPGDALNADHIS
RRLAKTFGGRSETLYAPAYVENRTLKEAFMQNGTIKDTLDRARRADIALVGIGDMNEDSYMVKLGWFTPREIVDASLNQG
VIGEIGGYDFFNAQGMHVDTVMNDRVIGLSIDELRNIPCVIAIAAENSKALAILGALRTGAIDIIATSAANIRTLLSVLA

Sequences:

>Translated_320_residues
MERQNGTLDEQLLTEIAVAYYQNDITQQEIAKKFGISRIKVGRLLKRAKEEGIVEISVRYHPVFSTRLEQQLKAHFPITR
ALIALDCQDEDEQRRHVAALVFNHLSTVLRDDMAVAVGQGRNVAAVAGHVGNAAERRCRFICGIGGNHRPGDALNADHIS
RRLAKTFGGRSETLYAPAYVENRTLKEAFMQNGTIKDTLDRARRADIALVGIGDMNEDSYMVKLGWFTPREIVDASLNQG
VIGEIGGYDFFNAQGMHVDTVMNDRVIGLSIDELRNIPCVIAIAAENSKALAILGALRTGAIDIIATSAANIRTLLSVLA
>Mature_320_residues
MERQNGTLDEQLLTEIAVAYYQNDITQQEIAKKFGISRIKVGRLLKRAKEEGIVEISVRYHPVFSTRLEQQLKAHFPITR
ALIALDCQDEDEQRRHVAALVFNHLSTVLRDDMAVAVGQGRNVAAVAGHVGNAAERRCRFICGIGGNHRPGDALNADHIS
RRLAKTFGGRSETLYAPAYVENRTLKEAFMQNGTIKDTLDRARRADIALVGIGDMNEDSYMVKLGWFTPREIVDASLNQG
VIGEIGGYDFFNAQGMHVDTVMNDRVIGLSIDELRNIPCVIAIAAENSKALAILGALRTGAIDIIATSAANIRTLLSVLA

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=311, Percent_Identity=25.4019292604502, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082414, Length=289, Percent_Identity=24.5674740484429, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35167; Mature: 35167

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERQNGTLDEQLLTEIAVAYYQNDITQQEIAKKFGISRIKVGRLLKRAKEEGIVEISVRY
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEEE
HPVFSTRLEQQLKAHFPITRALIALDCQDEDEQRRHVAALVFNHLSTVLRDDMAVAVGQG
CCHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
RNVAAVAGHVGNAAERRCRFICGIGGNHRPGDALNADHISRRLAKTFGGRSETLYAPAYV
CCEEEECCCCCCHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCHHH
ENRTLKEAFMQNGTIKDTLDRARRADIALVGIGDMNEDSYMVKLGWFTPREIVDASLNQG
CCHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHCCCC
VIGEIGGYDFFNAQGMHVDTVMNDRVIGLSIDELRNIPCVIAIAAENSKALAILGALRTG
CEECCCCCCCCCCCCCEEEEECCCEEEEEEHHHHCCCCEEEEEEECCCCEEEEEEHHHHC
AIDIIATSAANIRTLLSVLA
CEEEEECCHHHHHHHHHHHC
>Mature Secondary Structure
MERQNGTLDEQLLTEIAVAYYQNDITQQEIAKKFGISRIKVGRLLKRAKEEGIVEISVRY
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEEE
HPVFSTRLEQQLKAHFPITRALIALDCQDEDEQRRHVAALVFNHLSTVLRDDMAVAVGQG
CCHHHHHHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
RNVAAVAGHVGNAAERRCRFICGIGGNHRPGDALNADHISRRLAKTFGGRSETLYAPAYV
CCEEEECCCCCCHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCHHH
ENRTLKEAFMQNGTIKDTLDRARRADIALVGIGDMNEDSYMVKLGWFTPREIVDASLNQG
CCHHHHHHHHCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHCCCC
VIGEIGGYDFFNAQGMHVDTVMNDRVIGLSIDELRNIPCVIAIAAENSKALAILGALRTG
CEECCCCCCCCCCCCCEEEEECCCEEEEEEHHHHCCCCEEEEEEECCCCEEEEEEHHHHC
AIDIIATSAANIRTLLSVLA
CEEEEECCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]