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The map label for this gene is ybeX [C]

Identifier: 238917302

GI number: 238917302

Start: 1417731

End: 1418612

Strand: Reverse

Name: ybeX [C]

Synonym: EUBELI_01377

Alternate gene names: 238917302

Gene position: 1418612-1417731 (Counterclockwise)

Preceding gene: 238917303

Following gene: 238917301

Centisome position: 66.16

GC content: 38.21

Gene sequence:

>882_bases
ATGAATGACGGCCATCCCGCGGATGGGAAAGAAAAGAAGTTTTCGTCACTGTTTAAGAGATTTGGCAGAGGAAAACGCGA
TGAGGATGTAACAGAAGAGATAATGGATATGGTTAATGAGAGCCATGAACAGGGTGTGCTTGAGGAGAATGAGGCTGAGA
TGATTGGCAATATATTCGAATTTGGAGAAAAGCAGGCATCAGATGTAATGACTCACAGAAACAATATTGTAGCACTTGAT
AATGATATTACGGTTAAAGAGGCATTTGACCGTGTTATGGAAGAAAATTATTCAAGGTATCCGGTATATGATGGAGATAT
TGATAATATAACAGGTGTGTTACATATCCGTGATCTTCTCAAAATATATGTAGAGGAAAGCAACCAGAGCAGAAAACTTG
GTGAGGTTGGGAAAGAAATACTTTTTCAGCCATATTGCATACCTGAGACGAGAAATATAAGTCCATTATTCAGGCAGATG
CAGTCAGATAAAATCCATATGGCTATAGTTGTGGATGAATATGGACAGACAGCAGGAATCATAACAATGGAGGATATACT
TGAGGAAATAGTAGGTAATATCCTTGATGAATATGATGACGAAGAGGAACAGATAGTAACCGACGCAGACGGTTCTTATA
TAATAGAAGGTCAGGCTGATCTTGAAGATGTGGAAGCCAGGTTAGGAATAGAATTTGAGTGTGAGGATATTGATACACTC
AGTGGTTTTATGATTTATAAGCTTGGCAAAATACCCGATGATGGGGAGAGCTTTGAAGTTGAGTATAATGGGTACATATT
TAAGACTCTTGAAGTCCGTAACAGGATGATACTTAAAGTTAAAGTAGAAAAGGAAAATCGGGAAGGACATATTGACGGAT
AA

Upstream 100 bases:

>100_bases
CTGTAAGCTTAGAGATGAATTGACTGTCAGCATAAAACTGTGTTATTATAGACAGGATAATTGTTATCGTACAATAGGAT
ATTATTTATGGAGGAATATT

Downstream 100 bases:

>100_bases
GCAGCCGGATTCCTTAGAATGGGGGAATTATGCGTAAATATGAATTAGATATTTCATACGAAGGCAATATGCCTAATGAG
GTTGAATTCACACTCGATGA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNDGHPADGKEKKFSSLFKRFGRGKRDEDVTEEIMDMVNESHEQGVLEENEAEMIGNIFEFGEKQASDVMTHRNNIVALD
NDITVKEAFDRVMEENYSRYPVYDGDIDNITGVLHIRDLLKIYVEESNQSRKLGEVGKEILFQPYCIPETRNISPLFRQM
QSDKIHMAIVVDEYGQTAGIITMEDILEEIVGNILDEYDDEEEQIVTDADGSYIIEGQADLEDVEARLGIEFECEDIDTL
SGFMIYKLGKIPDDGESFEVEYNGYIFKTLEVRNRMILKVKVEKENREGHIDG

Sequences:

>Translated_293_residues
MNDGHPADGKEKKFSSLFKRFGRGKRDEDVTEEIMDMVNESHEQGVLEENEAEMIGNIFEFGEKQASDVMTHRNNIVALD
NDITVKEAFDRVMEENYSRYPVYDGDIDNITGVLHIRDLLKIYVEESNQSRKLGEVGKEILFQPYCIPETRNISPLFRQM
QSDKIHMAIVVDEYGQTAGIITMEDILEEIVGNILDEYDDEEEQIVTDADGSYIIEGQADLEDVEARLGIEFECEDIDTL
SGFMIYKLGKIPDDGESFEVEYNGYIFKTLEVRNRMILKVKVEKENREGHIDG
>Mature_293_residues
MNDGHPADGKEKKFSSLFKRFGRGKRDEDVTEEIMDMVNESHEQGVLEENEAEMIGNIFEFGEKQASDVMTHRNNIVALD
NDITVKEAFDRVMEENYSRYPVYDGDIDNITGVLHIRDLLKIYVEESNQSRKLGEVGKEILFQPYCIPETRNISPLFRQM
QSDKIHMAIVVDEYGQTAGIITMEDILEEIVGNILDEYDDEEEQIVTDADGSYIIEGQADLEDVEARLGIEFECEDIDTL
SGFMIYKLGKIPDDGESFEVEYNGYIFKTLEVRNRMILKVKVEKENREGHIDG

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=211, Percent_Identity=39.8104265402844, Blast_Score=138, Evalue=5e-33,
Organism=Escherichia coli, GI1786879, Length=286, Percent_Identity=28.6713286713287, Blast_Score=130, Evalue=8e-32,
Organism=Escherichia coli, GI87082033, Length=289, Percent_Identity=28.3737024221453, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790664, Length=262, Percent_Identity=29.3893129770992, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI145693175, Length=256, Percent_Identity=26.5625, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788119, Length=243, Percent_Identity=27.1604938271605, Blast_Score=90, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 33648; Mature: 33648

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDGHPADGKEKKFSSLFKRFGRGKRDEDVTEEIMDMVNESHEQGVLEENEAEMIGNIFE
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHH
FGEKQASDVMTHRNNIVALDNDITVKEAFDRVMEENYSRYPVYDGDIDNITGVLHIRDLL
HHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
KIYVEESNQSRKLGEVGKEILFQPYCIPETRNISPLFRQMQSDKIHMAIVVDEYGQTAGI
HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCE
ITMEDILEEIVGNILDEYDDEEEQIVTDADGSYIIEGQADLEDVEARLGIEFECEDIDTL
EEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCHHHHHHHHCCEEECCCCCCH
SGFMIYKLGKIPDDGESFEVEYNGYIFKTLEVRNRMILKVKVEKENREGHIDG
HCCCEEEECCCCCCCCEEEEEECCEEEEEEECCCEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MNDGHPADGKEKKFSSLFKRFGRGKRDEDVTEEIMDMVNESHEQGVLEENEAEMIGNIFE
CCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHH
FGEKQASDVMTHRNNIVALDNDITVKEAFDRVMEENYSRYPVYDGDIDNITGVLHIRDLL
HHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
KIYVEESNQSRKLGEVGKEILFQPYCIPETRNISPLFRQMQSDKIHMAIVVDEYGQTAGI
HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCE
ITMEDILEEIVGNILDEYDDEEEQIVTDADGSYIIEGQADLEDVEARLGIEFECEDIDTL
EEHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCHHHHHHHHCCEEECCCCCCH
SGFMIYKLGKIPDDGESFEVEYNGYIFKTLEVRNRMILKVKVEKENREGHIDG
HCCCEEEECCCCCCCCEEEEEECCEEEEEEECCCEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]