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The map label for this gene is lytB [H]

Identifier: 238917098

GI number: 238917098

Start: 1179806

End: 1181452

Strand: Reverse

Name: lytB [H]

Synonym: EUBELI_01168

Alternate gene names: 238917098

Gene position: 1181452-1179806 (Counterclockwise)

Preceding gene: 238917099

Following gene: 238917096

Centisome position: 55.1

GC content: 38.37

Gene sequence:

>1647_bases
ATGATTAAATCAAGATATCAGGACACATCGTCAGAAATCAATCTTTATAAAAATGTATATGTAACTAATATAGAAGACAA
TACAATAACTGCCAATATGTATGGTAATATAAAGAAATTCAATACTGGAAAGATAGCAGAAGATGTAACCGGGTGTTTAT
GTGATATTATCGTTGAGAATGGAAAGATTGTTGGAGTTAATACAAAGACGGATGTTGTAAGTGGAAAGGTGCTGTCAGTT
TCACAAGACAGCGTTGAAATTGAAGGTTATGGCTCTGTTAAGCTGGATGAGGACTTTATTATGTATGAAAAAGAAAACTC
ATTGATAAGTAATTACAGCAGTATAATTGTCGGTTATGCATTACAGGATTTTATTGTGGCGGATGGAGAAGTCTGTGGTG
CTATTAAGAATAAACCTTTGCAGGCTGACAATATAAGAGTAATTATCAAGACAAGCGGATTCAGAGATATATTTTTTAAT
GAAGCAGTTTTTTGTGCTGATTCAGGAATGATAGTTGAGACTGGTGAAGAATCTTATGAGACAGCACCCGGGGAGATGGT
TGTGTTTAATCCGGATACAGAAGACTTTAATGAGGGCAGAATAAAACTAATTCCTAAATCAGGTGAGATACAGTTCCAAT
CAGTAAACAGAGGCGTAGGAACACCTTCATATGGTGGAACTATTGAAGTTTCACTGTATGATGAAGGAATTGTTATTGTA
AATGAAGTGGGGATAGAAGATTATCTTAAAAAAGTTGTCCCTAGCGAGATGCCGTCAGGGTTTAATCTTGAAGCACTGAA
ATGTCAGGCTGTATGTGCAAGAAGCTATGCTTATACGGAACTTTCTAATAACTATTATAGTGCTTATGGAGCACATATTG
ATGACTCAATACAGTTTCAGGTATATAATAACTCACAGCGGGCAGAATCAACAGATACTGCAGTAGATGAGACAGCGGGA
CAGGTGCTATCATATAACGGAGAAGTTGTTAAGACATATTACTATTCAACCTCATGTGGAAGCACAACAGACGTTACACT
CTGGGGCAATACAACAGAAAACTATCCGTATTTTGTTGCGGAGTGTGTGGGCGGAGTGGACAGAGGACTTACACTGACAG
TAGAATCGGAGTTTAATACATTTATAAAAGGTGAAAATGAAGCTGATTATGATTACGACTGCACATTGTACAGATGGAGC
ATGGAGGAATCTGTTAAAGAGATAAGTGAAGGATTTGCACGTTCTACAGGGAAGAATGTAGGAAACATAACAGATATTGA
AGTCCTTGAGCGTGTTAATGGAGGAGCTGCAGTAAAAGTTAAAGTTACAGGTGATAAAGGCGAGACAGTGATAGACAGTG
AATCAGCGATTAGGGCAGCATTTGGCAATGCAAATGTGGATATGAACACTAAGTCAGGAACGACAAGATATGCTAATCTC
CCAAGCACATTCTGTGTGTTTGAGAAAGTGACGGAGGGAAAGAAGCTTACAGGCTTTAAGATAACAGGAGGTGGCTACGG
ACATGGAATTGGCATGAGTCAGAATGCTGCCAATAAAATGGCAGAATCCATGACTTACGCGCAGATTCTGGAATTCTTCT
ACAGAGGTACTACGCTTACTCTGATTTCTTCCCAAGATAATGACTGA

Upstream 100 bases:

>100_bases
GTATGGAGAATAGTATATGAAACAGAGAACAAAAATAATATTCTTAGCCTATTCTGCACTGGTGATTTTTATGTCATCAG
CATGTATATATATGTCATGT

Downstream 100 bases:

>100_bases
ATATTTTTTCATCATTGATGAAGTAGTTAATCTCTGCACCGATGAATATTATAATCATACAGGCATACATCCATATAAGT
GCTATGATGATAGTAGCAAG

Product: stage II sporulation protein D

Products: NA

Alternate protein names: Cell wall-associated polypeptide CWBP76; CWBP76; Modifier protein of major autolysin [H]

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MIKSRYQDTSSEINLYKNVYVTNIEDNTITANMYGNIKKFNTGKIAEDVTGCLCDIIVENGKIVGVNTKTDVVSGKVLSV
SQDSVEIEGYGSVKLDEDFIMYEKENSLISNYSSIIVGYALQDFIVADGEVCGAIKNKPLQADNIRVIIKTSGFRDIFFN
EAVFCADSGMIVETGEESYETAPGEMVVFNPDTEDFNEGRIKLIPKSGEIQFQSVNRGVGTPSYGGTIEVSLYDEGIVIV
NEVGIEDYLKKVVPSEMPSGFNLEALKCQAVCARSYAYTELSNNYYSAYGAHIDDSIQFQVYNNSQRAESTDTAVDETAG
QVLSYNGEVVKTYYYSTSCGSTTDVTLWGNTTENYPYFVAECVGGVDRGLTLTVESEFNTFIKGENEADYDYDCTLYRWS
MEESVKEISEGFARSTGKNVGNITDIEVLERVNGGAAVKVKVTGDKGETVIDSESAIRAAFGNANVDMNTKSGTTRYANL
PSTFCVFEKVTEGKKLTGFKITGGGYGHGIGMSQNAANKMAESMTYAQILEFFYRGTTLTLISSQDND

Sequences:

>Translated_548_residues
MIKSRYQDTSSEINLYKNVYVTNIEDNTITANMYGNIKKFNTGKIAEDVTGCLCDIIVENGKIVGVNTKTDVVSGKVLSV
SQDSVEIEGYGSVKLDEDFIMYEKENSLISNYSSIIVGYALQDFIVADGEVCGAIKNKPLQADNIRVIIKTSGFRDIFFN
EAVFCADSGMIVETGEESYETAPGEMVVFNPDTEDFNEGRIKLIPKSGEIQFQSVNRGVGTPSYGGTIEVSLYDEGIVIV
NEVGIEDYLKKVVPSEMPSGFNLEALKCQAVCARSYAYTELSNNYYSAYGAHIDDSIQFQVYNNSQRAESTDTAVDETAG
QVLSYNGEVVKTYYYSTSCGSTTDVTLWGNTTENYPYFVAECVGGVDRGLTLTVESEFNTFIKGENEADYDYDCTLYRWS
MEESVKEISEGFARSTGKNVGNITDIEVLERVNGGAAVKVKVTGDKGETVIDSESAIRAAFGNANVDMNTKSGTTRYANL
PSTFCVFEKVTEGKKLTGFKITGGGYGHGIGMSQNAANKMAESMTYAQILEFFYRGTTLTLISSQDND
>Mature_548_residues
MIKSRYQDTSSEINLYKNVYVTNIEDNTITANMYGNIKKFNTGKIAEDVTGCLCDIIVENGKIVGVNTKTDVVSGKVLSV
SQDSVEIEGYGSVKLDEDFIMYEKENSLISNYSSIIVGYALQDFIVADGEVCGAIKNKPLQADNIRVIIKTSGFRDIFFN
EAVFCADSGMIVETGEESYETAPGEMVVFNPDTEDFNEGRIKLIPKSGEIQFQSVNRGVGTPSYGGTIEVSLYDEGIVIV
NEVGIEDYLKKVVPSEMPSGFNLEALKCQAVCARSYAYTELSNNYYSAYGAHIDDSIQFQVYNNSQRAESTDTAVDETAG
QVLSYNGEVVKTYYYSTSCGSTTDVTLWGNTTENYPYFVAECVGGVDRGLTLTVESEFNTFIKGENEADYDYDCTLYRWS
MEESVKEISEGFARSTGKNVGNITDIEVLERVNGGAAVKVKVTGDKGETVIDSESAIRAAFGNANVDMNTKSGTTRYANL
PSTFCVFEKVTEGKKLTGFKITGGGYGHGIGMSQNAANKMAESMTYAQILEFFYRGTTLTLISSQDND

Specific function: Possibly involved in cell wall metabolism during spore formation. Enhances the amidase activity approximately threefold [H]

COG id: COG2385

COG function: function code D; Sporulation protein and related proteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein. Secreted, cell wall. Note=Cell wall localization shown in PubMed:11987133 [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007253
- InterPro:   IPR013486
- InterPro:   IPR013693 [H]

Pfam domain/function: PF04122 CW_binding_2; PF08486 SpoIID [H]

EC number: NA

Molecular weight: Translated: 60014; Mature: 60014

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKSRYQDTSSEINLYKNVYVTNIEDNTITANMYGNIKKFNTGKIAEDVTGCLCDIIVEN
CCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCEEEECCCCHHHHHHHHEEEEEECC
GKIVGVNTKTDVVSGKVLSVSQDSVEIEGYGSVKLDEDFIMYEKENSLISNYSSIIVGYA
CEEEEECCCCCEECCEEEEECCCCEEEEECCCEEECCCEEEEECCCCHHHHHHHHHHHHH
LQDFIVADGEVCGAIKNKPLQADNIRVIIKTSGFRDIFFNEAVFCADSGMIVETGEESYE
HHHEEEECCCEEHHHCCCCCCCCCEEEEEEECCCCEECCCCEEEEECCCEEEECCCCHHC
TAPGEMVVFNPDTEDFNEGRIKLIPKSGEIQFQSVNRGVGTPSYGGTIEVSLYDEGIVIV
CCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEE
NEVGIEDYLKKVVPSEMPSGFNLEALKCQAVCARSYAYTELSNNYYSAYGAHIDDSIQFQ
EECCHHHHHHHHCHHHCCCCCCEEHEEHHHHHHCCEEEEECCCCEEEEECCCCCCCEEEE
VYNNSQRAESTDTAVDETAGQVLSYNGEVVKTYYYSTSCGSTTDVTLWGNTTENYPYFVA
EECCCCCCCCCCCHHHHHCCCEEECCCCEEEEEEEECCCCCCEEEEEECCCCCCCCEEHH
ECVGGVDRGLTLTVESEFNTFIKGENEADYDYDCTLYRWSMEESVKEISEGFARSTGKNV
HHHCCCCCCEEEEEECCCCEEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCC
GNITDIEVLERVNGGAAVKVKVTGDKGETVIDSESAIRAAFGNANVDMNTKSGTTRYANL
CCCCHHHHHHHCCCCEEEEEEEECCCCCEEECCCCHHEEECCCCCEEECCCCCCEEECCC
PSTFCVFEKVTEGKKLTGFKITGGGYGHGIGMSQNAANKMAESMTYAQILEFFYRGTTLT
CCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
LISSQDND
EEECCCCC
>Mature Secondary Structure
MIKSRYQDTSSEINLYKNVYVTNIEDNTITANMYGNIKKFNTGKIAEDVTGCLCDIIVEN
CCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEECCCEEEECCCCHHHHHHHHEEEEEECC
GKIVGVNTKTDVVSGKVLSVSQDSVEIEGYGSVKLDEDFIMYEKENSLISNYSSIIVGYA
CEEEEECCCCCEECCEEEEECCCCEEEEECCCEEECCCEEEEECCCCHHHHHHHHHHHHH
LQDFIVADGEVCGAIKNKPLQADNIRVIIKTSGFRDIFFNEAVFCADSGMIVETGEESYE
HHHEEEECCCEEHHHCCCCCCCCCEEEEEEECCCCEECCCCEEEEECCCEEEECCCCHHC
TAPGEMVVFNPDTEDFNEGRIKLIPKSGEIQFQSVNRGVGTPSYGGTIEVSLYDEGIVIV
CCCCCEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCEEEEEEECCCEEEE
NEVGIEDYLKKVVPSEMPSGFNLEALKCQAVCARSYAYTELSNNYYSAYGAHIDDSIQFQ
EECCHHHHHHHHCHHHCCCCCCEEHEEHHHHHHCCEEEEECCCCEEEEECCCCCCCEEEE
VYNNSQRAESTDTAVDETAGQVLSYNGEVVKTYYYSTSCGSTTDVTLWGNTTENYPYFVA
EECCCCCCCCCCCHHHHHCCCEEECCCCEEEEEEEECCCCCCEEEEEECCCCCCCCEEHH
ECVGGVDRGLTLTVESEFNTFIKGENEADYDYDCTLYRWSMEESVKEISEGFARSTGKNV
HHHCCCCCCEEEEEECCCCEEECCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHCCCCC
GNITDIEVLERVNGGAAVKVKVTGDKGETVIDSESAIRAAFGNANVDMNTKSGTTRYANL
CCCCHHHHHHHCCCCEEEEEEEECCCCCEEECCCCHHEEECCCCCEEECCCCCCEEECCC
PSTFCVFEKVTEGKKLTGFKITGGGYGHGIGMSQNAANKMAESMTYAQILEFFYRGTTLT
CCHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
LISSQDND
EEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1357079; 1356138; 9384377 [H]