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The map label for this gene is yciR [C]

Identifier: 238916919

GI number: 238916919

Start: 1003318

End: 1004994

Strand: Direct

Name: yciR [C]

Synonym: EUBELI_00988

Alternate gene names: 238916919

Gene position: 1003318-1004994 (Clockwise)

Preceding gene: 238916918

Following gene: 238916920

Centisome position: 46.79

GC content: 32.08

Gene sequence:

>1677_bases
ATGATTAGAAGAGATTTTGATTTAGAAGAAATGAAGTATTTTCTTCATCTTGTCGGACAGAGTACAGATGATTATCTTTA
TATACTGGATTTAACTAATGATAAAGCTGTTTATTCAAAATCAATAACTAATGTGTTTGCACTTGATTCAGAGGAATTTT
CCAATGCTACGCAGGAATTGGTTAAAGTTGTTCATCCGGACGATATTGATATGCTGATGAATGATATAGAGGATGGAATG
AATGGAAGAAAGAGCAGTCATAATTTAGAGTATAGATGGAAAACTGTGGATGGAGAATATGTTGCAATAAATTGTAGAGG
ACAGTATATAATAAGCCATGGAGCTATTTACCTTATTGGAAGAATATCGGAGATTGGGAAACAGAGCAGATTTGATAATA
ATACAGGACTTTACAGGGAAATTGTTCTTGAAAATGTATATAATGAATATGCTAAAACCAGAAATGCGTCAGGTTTTCTT
ATGCTTGTTGGTGTAGATAATTTTAAAGAAATTAATGAAAAATATGGTGCAAAAACAGGTGATGAAGTGTTGAATATTCT
TACTGATTCAATAAAGAAATATATTGACACACCACTTAGAATATTCAGAATGCCTGGTGATGAATGTGCCATATTTATGC
CGTATTCCATGGAAAATGATATTAATCAGGCTAAGATTCTCTATAAGAGAATAAGAAATCGTATTGACAGAGCAATTGAA
AAAAGAAAGTATGACATATTTTTTACAATATCAGCAGGGGTTGCTGAATTTGATACAGAGAAAGACAGTTTTAATGAGTT
GTTAAAAAATGCCAAATTTGCTCTTCATGCTGCCAAACTCAATGGTAAGAACCGATGTGAAATATTTGTTGAAACTGAGT
ATACAGAGTATATAGAAAAACTTAGTGTTCAGGATGAATTACGCAGATGTATAAGTGAAGGTTTTGAAGGATTTGAGTTA
TATTTTCAGCCAATATATAATACCGACGATGACAGTTTGTCAGGAGCAGAGGCTCTTATAAGATGGAATAGCAGAAAATA
TGGATTTATAGGTCCTAACACATTCATACCGCTTCTAGAGGACAGTGCACTTATTATTCCACTTGGAAGATGGATAATTA
ATACTGCTGCTAAGGCATGTAACAGATGGATTACCAGTATTCCGGATTTTGTTATGCATATTAATCTGTCTTTTGTACAG
ATTGTCAAAAGTAATATAGTTAAAGATGTATTAGAGAATATCGAAAGATACAGTGCAGCTAATAATCATTATGTATTTGA
AATAACAGAAACTATAGAGATGGACCAGATACCAGCTGTTCAGAACGTATTTAAAGAATTTGTAAAGAATGAATTCAGAT
TCGCAATTGATGATTTTGGAACAGGATATTCAAATTATGGATATATGCGTGACAGAACATTTGATATAGTTAAAGTTGAC
AGGTCTTTTGTAACTGATATAGATAAACTTAAAGATAATTATCTTATGGTAAGTTTTATAATTAAGATGGCACATGAGAT
GGGATTGCATGTGTGTATTGAGGGTGTTGAAACAAAGGAAGAACTTTCATGTGTTAAGAAACTTGGTGCAGATTATATTC
AGGGATACTATTATGGTAAACCGGTATGCTTACAAGATTTTGAAGAACAGCACTTGAAAAGATTTGTATTAGGATAA

Upstream 100 bases:

>100_bases
AGGACCTATGGGACTTAAAGCGCTTACAACGACTAAGTATGTCATATACGGAGAGGGGCAGATAAGACAGTAAGCTGTTT
TATGGGTATTAGGTGTTTTT

Downstream 100 bases:

>100_bases
GTATAGAATGGAGAATTGTAGATAATGCAGGAAGATAATAACACCAGTGCACTTGAAGAACAGCTTTATTATATTGGAGA
ATGTAAGAAGTTCCTGGAAA

Product: two-component system PleD-like family response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MIRRDFDLEEMKYFLHLVGQSTDDYLYILDLTNDKAVYSKSITNVFALDSEEFSNATQELVKVVHPDDIDMLMNDIEDGM
NGRKSSHNLEYRWKTVDGEYVAINCRGQYIISHGAIYLIGRISEIGKQSRFDNNTGLYREIVLENVYNEYAKTRNASGFL
MLVGVDNFKEINEKYGAKTGDEVLNILTDSIKKYIDTPLRIFRMPGDECAIFMPYSMENDINQAKILYKRIRNRIDRAIE
KRKYDIFFTISAGVAEFDTEKDSFNELLKNAKFALHAAKLNGKNRCEIFVETEYTEYIEKLSVQDELRRCISEGFEGFEL
YFQPIYNTDDDSLSGAEALIRWNSRKYGFIGPNTFIPLLEDSALIIPLGRWIINTAAKACNRWITSIPDFVMHINLSFVQ
IVKSNIVKDVLENIERYSAANNHYVFEITETIEMDQIPAVQNVFKEFVKNEFRFAIDDFGTGYSNYGYMRDRTFDIVKVD
RSFVTDIDKLKDNYLMVSFIIKMAHEMGLHVCIEGVETKEELSCVKKLGADYIQGYYYGKPVCLQDFEEQHLKRFVLG

Sequences:

>Translated_558_residues
MIRRDFDLEEMKYFLHLVGQSTDDYLYILDLTNDKAVYSKSITNVFALDSEEFSNATQELVKVVHPDDIDMLMNDIEDGM
NGRKSSHNLEYRWKTVDGEYVAINCRGQYIISHGAIYLIGRISEIGKQSRFDNNTGLYREIVLENVYNEYAKTRNASGFL
MLVGVDNFKEINEKYGAKTGDEVLNILTDSIKKYIDTPLRIFRMPGDECAIFMPYSMENDINQAKILYKRIRNRIDRAIE
KRKYDIFFTISAGVAEFDTEKDSFNELLKNAKFALHAAKLNGKNRCEIFVETEYTEYIEKLSVQDELRRCISEGFEGFEL
YFQPIYNTDDDSLSGAEALIRWNSRKYGFIGPNTFIPLLEDSALIIPLGRWIINTAAKACNRWITSIPDFVMHINLSFVQ
IVKSNIVKDVLENIERYSAANNHYVFEITETIEMDQIPAVQNVFKEFVKNEFRFAIDDFGTGYSNYGYMRDRTFDIVKVD
RSFVTDIDKLKDNYLMVSFIIKMAHEMGLHVCIEGVETKEELSCVKKLGADYIQGYYYGKPVCLQDFEEQHLKRFVLG
>Mature_558_residues
MIRRDFDLEEMKYFLHLVGQSTDDYLYILDLTNDKAVYSKSITNVFALDSEEFSNATQELVKVVHPDDIDMLMNDIEDGM
NGRKSSHNLEYRWKTVDGEYVAINCRGQYIISHGAIYLIGRISEIGKQSRFDNNTGLYREIVLENVYNEYAKTRNASGFL
MLVGVDNFKEINEKYGAKTGDEVLNILTDSIKKYIDTPLRIFRMPGDECAIFMPYSMENDINQAKILYKRIRNRIDRAIE
KRKYDIFFTISAGVAEFDTEKDSFNELLKNAKFALHAAKLNGKNRCEIFVETEYTEYIEKLSVQDELRRCISEGFEGFEL
YFQPIYNTDDDSLSGAEALIRWNSRKYGFIGPNTFIPLLEDSALIIPLGRWIINTAAKACNRWITSIPDFVMHINLSFVQ
IVKSNIVKDVLENIERYSAANNHYVFEITETIEMDQIPAVQNVFKEFVKNEFRFAIDDFGTGYSNYGYMRDRTFDIVKVD
RSFVTDIDKLKDNYLMVSFIIKMAHEMGLHVCIEGVETKEELSCVKKLGADYIQGYYYGKPVCLQDFEEQHLKRFVLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=399, Percent_Identity=27.0676691729323, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081921, Length=421, Percent_Identity=25.41567695962, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=32.0158102766798, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=30.9236947791165, Blast_Score=139, Evalue=7e-34,
Organism=Escherichia coli, GI1786507, Length=228, Percent_Identity=31.5789473684211, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081980, Length=236, Percent_Identity=30.5084745762712, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI226510982, Length=306, Percent_Identity=25.8169934640523, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081743, Length=236, Percent_Identity=30.5084745762712, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI87082096, Length=411, Percent_Identity=24.330900243309, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=28.3261802575107, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1788849, Length=271, Percent_Identity=27.6752767527675, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=32.6530612244898, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI145693134, Length=132, Percent_Identity=32.5757575757576, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=29.4478527607362, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=26.6272189349112, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64760; Mature: 64760

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRDFDLEEMKYFLHLVGQSTDDYLYILDLTNDKAVYSKSITNVFALDSEEFSNATQEL
CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHEEEECCHHHHHHHHHH
VKVVHPDDIDMLMNDIEDGMNGRKSSHNLEYRWKTVDGEYVAINCRGQYIISHGAIYLIG
HHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCEEEECCEEEEEE
RISEIGKQSRFDNNTGLYREIVLENVYNEYAKTRNASGFLMLVGVDNFKEINEKYGAKTG
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCH
DEVLNILTDSIKKYIDTPLRIFRMPGDECAIFMPYSMENDINQAKILYKRIRNRIDRAIE
HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
KRKYDIFFTISAGVAEFDTEKDSFNELLKNAKFALHAAKLNGKNRCEIFVETEYTEYIEK
HCCEEEEEEEECCCHHCCCCHHHHHHHHHCCHHEEEEEECCCCCEEEEEEECCHHHHHHH
LSVQDELRRCISEGFEGFELYFQPIYNTDDDSLSGAEALIRWNSRKYGFIGPNTFIPLLE
HCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHEEECCCCCCCCCCCCEEEEEC
DSALIIPLGRWIINTAAKACNRWITSIPDFVMHINLSFVQIVKSNIVKDVLENIERYSAA
CCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NNHYVFEITETIEMDQIPAVQNVFKEFVKNEFRFAIDDFGTGYSNYGYMRDRTFDIVKVD
CCCEEEEEECHHCCCCCHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCCCCCCEEEEEEC
RSFVTDIDKLKDNYLMVSFIIKMAHEMGLHVCIEGVETKEELSCVKKLGADYIQGYYYGK
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCHHHHCCEECCC
PVCLQDFEEQHLKRFVLG
CHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRRDFDLEEMKYFLHLVGQSTDDYLYILDLTNDKAVYSKSITNVFALDSEEFSNATQEL
CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHEEEECCHHHHHHHHHH
VKVVHPDDIDMLMNDIEDGMNGRKSSHNLEYRWKTVDGEYVAINCRGQYIISHGAIYLIG
HHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCEEEECCEEEEEE
RISEIGKQSRFDNNTGLYREIVLENVYNEYAKTRNASGFLMLVGVDNFKEINEKYGAKTG
CHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCH
DEVLNILTDSIKKYIDTPLRIFRMPGDECAIFMPYSMENDINQAKILYKRIRNRIDRAIE
HHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
KRKYDIFFTISAGVAEFDTEKDSFNELLKNAKFALHAAKLNGKNRCEIFVETEYTEYIEK
HCCEEEEEEEECCCHHCCCCHHHHHHHHHCCHHEEEEEECCCCCEEEEEEECCHHHHHHH
LSVQDELRRCISEGFEGFELYFQPIYNTDDDSLSGAEALIRWNSRKYGFIGPNTFIPLLE
HCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHEEECCCCCCCCCCCCEEEEEC
DSALIIPLGRWIINTAAKACNRWITSIPDFVMHINLSFVQIVKSNIVKDVLENIERYSAA
CCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
NNHYVFEITETIEMDQIPAVQNVFKEFVKNEFRFAIDDFGTGYSNYGYMRDRTFDIVKVD
CCCEEEEEECHHCCCCCHHHHHHHHHHHHCCCEEEEHHCCCCCCCCCCCCCCCEEEEEEC
RSFVTDIDKLKDNYLMVSFIIKMAHEMGLHVCIEGVETKEELSCVKKLGADYIQGYYYGK
HHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCHHHHCCEECCC
PVCLQDFEEQHLKRFVLG
CHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]