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The map label for this gene is rnfA [H]

Identifier: 238916869

GI number: 238916869

Start: 952872

End: 953483

Strand: Direct

Name: rnfA [H]

Synonym: EUBELI_00938

Alternate gene names: 238916869

Gene position: 952872-953483 (Clockwise)

Preceding gene: 238916868

Following gene: 238916870

Centisome position: 44.44

GC content: 36.93

Gene sequence:

>612_bases
ATGGGATATTTTTCACAGTTATTATTGATAGCTGTAAGTACAGCAATTGTCAATAATGTAGTTTTAAGCCAGTTCCTCGG
TTTGTGTCCTTTCCTTGGAGTTTCTAAGAAGATAAACACAGCAGCAGGAATGGGTGGCGCTGTTATCGGCGTTATCACTA
TTTCATCAGCTGTCTGCAGTCTTATATATGACTGTATACTTACACCGCTTAAGCTTACATATCTGAATACAATTGTATTC
ATCCTTGTAATTGCGGCACTTGTTCAGTTTGTTGAAATGTTTTTAAAGAAGACATCACCATCTCTTTATGAAGCACTTGG
TGTATACCTTCCACTTATTACAACTAACTGTGCAGTACTTGGTATTGCACTTACTAACGTACAGAACTATAACACAGCAG
CAGGACTTAATATTGGTCAGAAGCTTTTAGATTCTGTAGTCAGTGGATTAGGAACAGCTGTTGGTTTTACAATAGCAATC
ATAATCATGGCTGGTATACGTGAAAGAAACGAATTCAATGATGTTCCGGAAAGCTTTAAGGGAATGCCTATTGTATTACT
TACTGCAGGACTTATGGCTATCGCATTCTTTGGATTTTCAGGTATTATTTAA

Upstream 100 bases:

>100_bases
TTAAGAGAAAGAAAGGCATGAAGCCTGCAGAAGTTCCTGACTACACAGAAGAGATAGAAGAAGCTAAGGCTGAGGCTAAG
AATAACTAAGGGAGGTAAAT

Downstream 100 bases:

>100_bases
GAGGAGGACGACAAGATGTCAGGTATAATTATTGCTGCAGTTGTTGTAAGCTGCACTGGTCTTCTTCTCGGACTTTTCCT
CGGAGTAATGGGTAAGAAGT

Product: electron transport complex protein RnfA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MGYFSQLLLIAVSTAIVNNVVLSQFLGLCPFLGVSKKINTAAGMGGAVIGVITISSAVCSLIYDCILTPLKLTYLNTIVF
ILVIAALVQFVEMFLKKTSPSLYEALGVYLPLITTNCAVLGIALTNVQNYNTAAGLNIGQKLLDSVVSGLGTAVGFTIAI
IIMAGIRERNEFNDVPESFKGMPIVLLTAGLMAIAFFGFSGII

Sequences:

>Translated_203_residues
MGYFSQLLLIAVSTAIVNNVVLSQFLGLCPFLGVSKKINTAAGMGGAVIGVITISSAVCSLIYDCILTPLKLTYLNTIVF
ILVIAALVQFVEMFLKKTSPSLYEALGVYLPLITTNCAVLGIALTNVQNYNTAAGLNIGQKLLDSVVSGLGTAVGFTIAI
IIMAGIRERNEFNDVPESFKGMPIVLLTAGLMAIAFFGFSGII
>Mature_202_residues
GYFSQLLLIAVSTAIVNNVVLSQFLGLCPFLGVSKKINTAAGMGGAVIGVITISSAVCSLIYDCILTPLKLTYLNTIVFI
LVIAALVQFVEMFLKKTSPSLYEALGVYLPLITTNCAVLGIALTNVQNYNTAAGLNIGQKLLDSVVSGLGTAVGFTIAII
IMAGIRERNEFNDVPESFKGMPIVLLTAGLMAIAFFGFSGII

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=199, Percent_Identity=53.2663316582915, Blast_Score=201, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21378; Mature: 21247

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYFSQLLLIAVSTAIVNNVVLSQFLGLCPFLGVSKKINTAAGMGGAVIGVITISSAVCS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
LIYDCILTPLKLTYLNTIVFILVIAALVQFVEMFLKKTSPSLYEALGVYLPLITTNCAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GIALTNVQNYNTAAGLNIGQKLLDSVVSGLGTAVGFTIAIIIMAGIRERNEFNDVPESFK
HHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
GMPIVLLTAGLMAIAFFGFSGII
CCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GYFSQLLLIAVSTAIVNNVVLSQFLGLCPFLGVSKKINTAAGMGGAVIGVITISSAVCS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
LIYDCILTPLKLTYLNTIVFILVIAALVQFVEMFLKKTSPSLYEALGVYLPLITTNCAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GIALTNVQNYNTAAGLNIGQKLLDSVVSGLGTAVGFTIAIIIMAGIRERNEFNDVPESFK
HHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
GMPIVLLTAGLMAIAFFGFSGII
CCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA