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The map label for this gene is rnfB [H]

Identifier: 238916870

GI number: 238916870

Start: 953499

End: 954290

Strand: Direct

Name: rnfB [H]

Synonym: EUBELI_00939

Alternate gene names: 238916870

Gene position: 953499-954290 (Clockwise)

Preceding gene: 238916869

Following gene: 238916871

Centisome position: 44.47

GC content: 40.66

Gene sequence:

>792_bases
ATGTCAGGTATAATTATTGCTGCAGTTGTTGTAAGCTGCACTGGTCTTCTTCTCGGACTTTTCCTCGGAGTAATGGGTAA
GAAGTTCTATGTTGAAGTAGATCAGAAAGAGATAGATGTAAGAGCAGAGCTTCCTGGAAACAACTGTGGTGGTTGTGGAT
ATGCAGGATGTGATGCACTTGCTAAGGCAATTGCCGCAGGAGAAGCTCCAGCTAACGCATGTCCAGTTGGTGGCGCACCG
GTTGCAGCAAAGATTGGTGCAATCATGGGTGAGGAAGTTGGAGAATCAGTAAGAATGACAGCATTTGTTAAATGTGCTGG
TGACTGCGACAAAGCAAAAGAAAATTATGTGTACTCAGGTGCAATGGATTGTACAGCAATGAACGTCGTTCCTAACGGCG
GTTCTAAGGCATGTACATATGGATGTATGGGATATGGTTCATGTGTTAAGGCATGTCCTTTTGATGCAATTCATATTGTT
AATGGTATTGCTGTAGTAGATAAGGGCAAATGTAAAGCATGTGGTAAATGTGTTGCTGTATGTCCAAGACACCTTATTGA
AATCATACCATACAAGAGTAACTATACAGTTAACTGTTCATCTAACGATAAGGGTAAAGATGTTATGTCAGCATGCTCTG
TTGGATGTATTGGATGTATGTTATGTACAAAGCAGTGTGAGTTCGGTGCTATTACAGTAGAAAACAATATTGCACATATT
GATTATTCAAAGTGTACAGGTTGTGGAAAGTGTGCTGAGAAGTGCCCTAAGAAGATAATACATCTTCATTGA

Upstream 100 bases:

>100_bases
GGAAAGCTTTAAGGGAATGCCTATTGTATTACTTACTGCAGGACTTATGGCTATCGCATTCTTTGGATTTTCAGGTATTA
TTTAAGAGGAGGACGACAAG

Downstream 100 bases:

>100_bases
TAATTTAATCACAATAAGTTATAATAAGAAACTGCCGTAGGCTTATGCTTATGGCAGTTTCCTAGTTTAAGAAAAGAGAA
GATACACCTATGGCAGAGAT

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MSGIIIAAVVVSCTGLLLGLFLGVMGKKFYVEVDQKEIDVRAELPGNNCGGCGYAGCDALAKAIAAGEAPANACPVGGAP
VAAKIGAIMGEEVGESVRMTAFVKCAGDCDKAKENYVYSGAMDCTAMNVVPNGGSKACTYGCMGYGSCVKACPFDAIHIV
NGIAVVDKGKCKACGKCVAVCPRHLIEIIPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQCEFGAITVENNIAHI
DYSKCTGCGKCAEKCPKKIIHLH

Sequences:

>Translated_263_residues
MSGIIIAAVVVSCTGLLLGLFLGVMGKKFYVEVDQKEIDVRAELPGNNCGGCGYAGCDALAKAIAAGEAPANACPVGGAP
VAAKIGAIMGEEVGESVRMTAFVKCAGDCDKAKENYVYSGAMDCTAMNVVPNGGSKACTYGCMGYGSCVKACPFDAIHIV
NGIAVVDKGKCKACGKCVAVCPRHLIEIIPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQCEFGAITVENNIAHI
DYSKCTGCGKCAEKCPKKIIHLH
>Mature_262_residues
SGIIIAAVVVSCTGLLLGLFLGVMGKKFYVEVDQKEIDVRAELPGNNCGGCGYAGCDALAKAIAAGEAPANACPVGGAPV
AAKIGAIMGEEVGESVRMTAFVKCAGDCDKAKENYVYSGAMDCTAMNVVPNGGSKACTYGCMGYGSCVKACPFDAIHIVN
GIAVVDKGKCKACGKCVAVCPRHLIEIIPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQCEFGAITVENNIAHID
YSKCTGCGKCAEKCPKKIIHLH

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=192, Percent_Identity=29.6875, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 27145; Mature: 27014

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
13.3 %Cys+Met (Translated Protein)
9.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
13.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGIIIAAVVVSCTGLLLGLFLGVMGKKFYVEVDQKEIDVRAELPGNNCGGCGYAGCDAL
CCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHH
AKAIAAGEAPANACPVGGAPVAAKIGAIMGEEVGESVRMTAFVKCAGDCDKAKENYVYSG
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHEEEEEEEECCCCHHHHCCEEEEC
AMDCTAMNVVPNGGSKACTYGCMGYGSCVKACPFDAIHIVNGIAVVDKGKCKACGKCVAV
CCCEEEEEEECCCCCCCEEECCCCCCHHHHHCCCCHHHHHCCEEEEECCCCHHHHHHHHH
CPRHLIEIIPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQCEFGAITVENNIAHI
HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEE
DYSKCTGCGKCAEKCPKKIIHLH
EHHHCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SGIIIAAVVVSCTGLLLGLFLGVMGKKFYVEVDQKEIDVRAELPGNNCGGCGYAGCDAL
CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHH
AKAIAAGEAPANACPVGGAPVAAKIGAIMGEEVGESVRMTAFVKCAGDCDKAKENYVYSG
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHEEEEEEEECCCCHHHHCCEEEEC
AMDCTAMNVVPNGGSKACTYGCMGYGSCVKACPFDAIHIVNGIAVVDKGKCKACGKCVAV
CCCEEEEEEECCCCCCCEEECCCCCCHHHHHCCCCHHHHHCCEEEEECCCCHHHHHHHHH
CPRHLIEIIPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQCEFGAITVENNIAHI
HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEE
DYSKCTGCGKCAEKCPKKIIHLH
EHHHCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA