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The map label for this gene is rnfE [H]

Identifier: 238916868

GI number: 238916868

Start: 952147

End: 952860

Strand: Direct

Name: rnfE [H]

Synonym: EUBELI_00937

Alternate gene names: 238916868

Gene position: 952147-952860 (Clockwise)

Preceding gene: 238916867

Following gene: 238916869

Centisome position: 44.41

GC content: 39.78

Gene sequence:

>714_bases
TTGTGGCAGGAAACTAGGGAGGTGCGGACTTTGAATAAATGTATAGAAAGACTTTATAATGGTATTATTAAAGAGAATCC
TACCCTGGTACTTACACTTGGTATGTGTCCTACACTTGCGGTTACTACATCAGCAATCAATGGTATAGGTATGGGACTTT
CTTCTACAGTAGTACTTGCATTATCAAACCTTATGATTTCATTACTTCGTAAGGCTATTCCAGATGGTGTAAGAATGCCA
GCGTTCATCGTTGTCGTTGCATCATTTGTTACAATGGTACAGTTCCTTATGCAGGGCTTCCTGCCAAGTCTGTACGACTC
ACTTGGAATATATATTCCTCTTATAGTTGTTAACTGTATTATCCTTGGACGTGCGGAAGCCTATGCTTCTAAGAATCCTC
CAATTCCTTCATTCTTTGATGGAATAGGTATGGGACTTGGATTCACAATTGCTATCACAATCCTTGGAGCAATAAGAGAG
CTTATCGGTGGCGGTACAATTTTCTCAGATGGTACTAACGCATTATTTGATCTCTCAACAATCGGTTACACACCAGCAAG
TATCTTTATCCTTGCACCAGGAGCGTTCTTTGTTCTTGCATTCATGATTGCTATTATGAACAGAATTAAGAGAAAGAAAG
GCATGAAGCCTGCAGAAGTTCCTGACTACACAGAAGAGATAGAAGAAGCTAAGGCTGAGGCTAAGAATAACTAA

Upstream 100 bases:

>100_bases
GCATCAGAAAGCAATGCTAATGTTGATGCAATCGGTGGTTCTACAATTACTTCTAAATCAGTCACAAAGGGTGTAAATTA
TGCGCTTGCAGTTTACAAGC

Downstream 100 bases:

>100_bases
GGGAGGTAAATATGGGATATTTTTCACAGTTATTATTGATAGCTGTAAGTACAGCAATTGTCAATAATGTAGTTTTAAGC
CAGTTCCTCGGTTTGTGTCC

Product: electron transport complex protein RnfE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MWQETREVRTLNKCIERLYNGIIKENPTLVLTLGMCPTLAVTTSAINGIGMGLSSTVVLALSNLMISLLRKAIPDGVRMP
AFIVVVASFVTMVQFLMQGFLPSLYDSLGIYIPLIVVNCIILGRAEAYASKNPPIPSFFDGIGMGLGFTIAITILGAIRE
LIGGGTIFSDGTNALFDLSTIGYTPASIFILAPGAFFVLAFMIAIMNRIKRKKGMKPAEVPDYTEEIEEAKAEAKNN

Sequences:

>Translated_237_residues
MWQETREVRTLNKCIERLYNGIIKENPTLVLTLGMCPTLAVTTSAINGIGMGLSSTVVLALSNLMISLLRKAIPDGVRMP
AFIVVVASFVTMVQFLMQGFLPSLYDSLGIYIPLIVVNCIILGRAEAYASKNPPIPSFFDGIGMGLGFTIAITILGAIRE
LIGGGTIFSDGTNALFDLSTIGYTPASIFILAPGAFFVLAFMIAIMNRIKRKKGMKPAEVPDYTEEIEEAKAEAKNN
>Mature_237_residues
MWQETREVRTLNKCIERLYNGIIKENPTLVLTLGMCPTLAVTTSAINGIGMGLSSTVVLALSNLMISLLRKAIPDGVRMP
AFIVVVASFVTMVQFLMQGFLPSLYDSLGIYIPLIVVNCIILGRAEAYASKNPPIPSFFDGIGMGLGFTIAITILGAIRE
LIGGGTIFSDGTNALFDLSTIGYTPASIFILAPGAFFVLAFMIAIMNRIKRKKGMKPAEVPDYTEEIEEAKAEAKNN

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=208, Percent_Identity=45.1923076923077, Blast_Score=144, Evalue=4e-36,
Organism=Escherichia coli, GI1787914, Length=145, Percent_Identity=32.4137931034483, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 25604; Mature: 25604

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQETREVRTLNKCIERLYNGIIKENPTLVLTLGMCPTLAVTTSAINGIGMGLSSTVVLA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHH
LSNLMISLLRKAIPDGVRMPAFIVVVASFVTMVQFLMQGFLPSLYDSLGIYIPLIVVNCI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILGRAEAYASKNPPIPSFFDGIGMGLGFTIAITILGAIRELIGGGTIFSDGTNALFDLST
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHEEHHH
IGYTPASIFILAPGAFFVLAFMIAIMNRIKRKKGMKPAEVPDYTEEIEEAKAEAKNN
HCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MWQETREVRTLNKCIERLYNGIIKENPTLVLTLGMCPTLAVTTSAINGIGMGLSSTVVLA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHH
LSNLMISLLRKAIPDGVRMPAFIVVVASFVTMVQFLMQGFLPSLYDSLGIYIPLIVVNCI
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILGRAEAYASKNPPIPSFFDGIGMGLGFTIAITILGAIRELIGGGTIFSDGTNALFDLST
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHEEHHH
IGYTPASIFILAPGAFFVLAFMIAIMNRIKRKKGMKPAEVPDYTEEIEEAKAEAKNN
HCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA