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The map label for this gene is mrnC [H]

Identifier: 238916435

GI number: 238916435

Start: 499363

End: 499806

Strand: Direct

Name: mrnC [H]

Synonym: EUBELI_00491

Alternate gene names: 238916435

Gene position: 499363-499806 (Clockwise)

Preceding gene: 238916434

Following gene: 238916436

Centisome position: 23.29

GC content: 42.57

Gene sequence:

>444_bases
ATGGAGCAGAGCCTAGATAACGACCTTGTAAAATGCATATATGAAGGCCTGGATATGAAGCATACAGAGCCTTCGCAGTT
ATCACCTCTTGTTCTTGCATATATCGGGGACAGCATATATGACCTTGTCATTAAGACATGGGTTATAGAACAGGGGAATA
TGCAGGTTAATAAGCTTAACAAGAAAACGAGCAGTATTGTTAAGGCTGAATCCCAATCTGCCATGATAGGTGTAATAGAG
CCAATGCTCAGTGAACATGAGGAAGCTGTGTATAAGAGAGGACGTAATGCAAAGTCATACACATCTGCCAAGAATGCAAG
CATTGGAGATTACAGAAGGGCAACGGGTTTTGAGGCTCTTATGGGATATCTGTATCTTAGTGGGCAGTATGAGCGGATGA
TGGAACTGGTTAAAGCAGGACTGGAAAGCCTTGAGTTAAAGTAG

Upstream 100 bases:

>100_bases
AGCAGGCAAGAAAAGATAAGAATTTTGCAAGAGCTGATGAAATTAGAGATGAGTTATTAGCAAAGGGAATTGTTCTTAAG
GATACAAGAGAGGGCGTAAG

Downstream 100 bases:

>100_bases
AGCCGGCAAAGCAGAATCCATATCTGTAATGGATAACTGGATTCTGCTTTGTTAATATTAAGGAGAAATATATGAGATAC
AATGAATTAACATTTCAGGG

Product: ribonuclease III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MEQSLDNDLVKCIYEGLDMKHTEPSQLSPLVLAYIGDSIYDLVIKTWVIEQGNMQVNKLNKKTSSIVKAESQSAMIGVIE
PMLSEHEEAVYKRGRNAKSYTSAKNASIGDYRRATGFEALMGYLYLSGQYERMMELVKAGLESLELK

Sequences:

>Translated_147_residues
MEQSLDNDLVKCIYEGLDMKHTEPSQLSPLVLAYIGDSIYDLVIKTWVIEQGNMQVNKLNKKTSSIVKAESQSAMIGVIE
PMLSEHEEAVYKRGRNAKSYTSAKNASIGDYRRATGFEALMGYLYLSGQYERMMELVKAGLESLELK
>Mature_147_residues
MEQSLDNDLVKCIYEGLDMKHTEPSQLSPLVLAYIGDSIYDLVIKTWVIEQGNMQVNKLNKKTSSIVKAESQSAMIGVIE
PMLSEHEEAVYKRGRNAKSYTSAKNASIGDYRRATGFEALMGYLYLSGQYERMMELVKAGLESLELK

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 16536; Mature: 16536

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQSLDNDLVKCIYEGLDMKHTEPSQLSPLVLAYIGDSIYDLVIKTWVIEQGNMQVNKLN
CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
KKTSSIVKAESQSAMIGVIEPMLSEHEEAVYKRGRNAKSYTSAKNASIGDYRRATGFEAL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHH
MGYLYLSGQYERMMELVKAGLESLELK
HHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEQSLDNDLVKCIYEGLDMKHTEPSQLSPLVLAYIGDSIYDLVIKTWVIEQGNMQVNKLN
CCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
KKTSSIVKAESQSAMIGVIEPMLSEHEEAVYKRGRNAKSYTSAKNASIGDYRRATGFEAL
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHH
MGYLYLSGQYERMMELVKAGLESLELK
HHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]