Click here to switch to the map view.

The map label for this gene is ygfT [H]

Identifier: 238916166

GI number: 238916166

Start: 224119

End: 225966

Strand: Direct

Name: ygfT [H]

Synonym: EUBELI_00200

Alternate gene names: 238916166

Gene position: 224119-225966 (Clockwise)

Preceding gene: 238916165

Following gene: 238916167

Centisome position: 10.45

GC content: 43.18

Gene sequence:

>1848_bases
ATGGAGCGGGAATTGAGCAGATTAACAATTATTACTAAGGATAAGGCTCAGGTTACAATGGAGTCTTTATATCAGGATTT
AGAGAGAAGAATAGTAGCAAGTCCACCGGGATTGTGTACTATTGACCTTACGAGGTCATTTATAAAAATGTGTCTTGCAC
AGTCATGTGGCAAATGTGTCCCATGCCGTGTGGGACTTAGACAGCTTGCGAGACTTTTTGATGATGTGCTTGATGGTAAC
GCAACAGAGGAAACTCTTGATGTTATCAGGCTCACAGCAGAGGGAATCTATTATTCGGCCGACTGTGCAATTGGATATGA
GGCGGCCAAGCTTGTATTAAAATGTATTGATGGCTGCGAGGATGATTTCAGGTCACATATGGAGAGGGGATTTTGTTCAT
GTAACAGTAACCAGCCGGTTGCATGCGTGAAATCATGTCCTGCAGGAGTAGATATTCCGGGATACATAGCACTTGTGCAT
GAAGGCAGATATGCAGACGCGGTTCGTCTTATAAGAAGAGACAATCCAATGCCTACAACATGCGCATACATTTGTGAGCA
TCCATGTGAAAACAGATGTAAGAGAACACTTATTGACGCGCCAGTCAACATCAGGGGACTTAAGAAAATGGCAGTTGATA
ATGCCGGTGATGTTCCGGTTCCAGCATGTAATGAGCCAACAGGTAAGAAAGTTGCAATAATCGGTGGTGGTCCGGGAGGA
CTCAGTGCTGCATATTATCTGGCTCTTATGGGACATAAGGTTACTATATTTGAGCAGAGAAAGCAGCTTGGCGGAATGTT
AAGATATGGAATTCCTAATTACAGACTTCCAAGAAAGAAGCTTGATGCAGAGATTAATTCAATTCTGTCTACAGGAATAG
AAGTTAAGAAAAATATAAGCGTAGGAACAGATATTACGCTTGAGGATATTAACAAAGAATATAATGCAGTATACATTTCT
ATCGGAGCACATGCAGACAAGAAGATTGGAATTGATGGTGAGGATGCTAAAACAGGCGTAATATCAGCAGTAGAAATGCT
TCGTGCAATTGGTGATGATGAGATGCCTGATTATACAGGCAAGCGTGTAGTTGTTATTGGCGGTGGAAATGTAGCAATGG
ATGTTGCCCGTTCTTCTGTAAGATTAGGTGCTGAGAAAGTAAGCATTGTATATAGAAGAAGAAAAGCCGACATGACGGCA
CTTCCGGAAGAGGTTGAAGGTGCAGAGGCAGAGGGCTGCGATGTTCTTGAACTTATGTCACCAGTTAGAATAGAGAAAGA
TGAAAATGACGCAGCAGTTGGTTTATGGGTTCAGCCACAGATGATAAGCAGGATAAAAGGTGGCAGACCATCACCTAAGA
CTGCAGCTAAGGACGAGGTTCTTATTCCTTGCGACCTTATTGTAGTTGCCATCGGACAGGGTATCGAAACAAGATATTTT
GAGGAGCATGGCGTTACAGTCAAGAGAGGAACAATTGAGGCACTTGATACAAGTGAGATTAAAGAACGTAAAGGAATATT
TGCAGGAGGAGACTGCGTAACAGGACCTGCAACAGTAATCAGGGCTATAGCAGCCGGAAAGGTTGCGGCAGCCAACATTG
ATGAATATCTTGGCTACCATCACGAGATAACTTCAGATGTAGAGATACCTTATGCCGGATATGAGGACAAGGTACCTTGC
GGACGAGTTGAGGTCGCACTGCGTGATGCCGCAGACAGAAAGAAAGACTTTGAACCTATTGAATATGGATTTTCATGCGA
GGAAGCATGTCAGGAATCTGGACGCTGCTTAAGATGTGATCATTTTGGATTTGGTTCATTCAGAGGAGGCAGAGAGAAAC
AATGGTAA

Upstream 100 bases:

>100_bases
AACCTTCCTTTTCAAATTAACATATATTGTGTAAAATGTTACATGGAACTGCCTAGCGGTATACTGGCAAGCAGCAATAC
GACATACGCAATATGCAGAA

Downstream 100 bases:

>100_bases
ATTTAACAATTAACGGTAAAGCTGTATCAGTAAAAGAAGGAACTACCATTCTTGAAGCTGCCAAAACAATAGGAGAGACA
ATACCTACACTCTGCTATCT

Product: glutamate synthase (NADPH) small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MERELSRLTIITKDKAQVTMESLYQDLERRIVASPPGLCTIDLTRSFIKMCLAQSCGKCVPCRVGLRQLARLFDDVLDGN
ATEETLDVIRLTAEGIYYSADCAIGYEAAKLVLKCIDGCEDDFRSHMERGFCSCNSNQPVACVKSCPAGVDIPGYIALVH
EGRYADAVRLIRRDNPMPTTCAYICEHPCENRCKRTLIDAPVNIRGLKKMAVDNAGDVPVPACNEPTGKKVAIIGGGPGG
LSAAYYLALMGHKVTIFEQRKQLGGMLRYGIPNYRLPRKKLDAEINSILSTGIEVKKNISVGTDITLEDINKEYNAVYIS
IGAHADKKIGIDGEDAKTGVISAVEMLRAIGDDEMPDYTGKRVVVIGGGNVAMDVARSSVRLGAEKVSIVYRRRKADMTA
LPEEVEGAEAEGCDVLELMSPVRIEKDENDAAVGLWVQPQMISRIKGGRPSPKTAAKDEVLIPCDLIVVAIGQGIETRYF
EEHGVTVKRGTIEALDTSEIKERKGIFAGGDCVTGPATVIRAIAAGKVAAANIDEYLGYHHEITSDVEIPYAGYEDKVPC
GRVEVALRDAADRKKDFEPIEYGFSCEEACQESGRCLRCDHFGFGSFRGGREKQW

Sequences:

>Translated_615_residues
MERELSRLTIITKDKAQVTMESLYQDLERRIVASPPGLCTIDLTRSFIKMCLAQSCGKCVPCRVGLRQLARLFDDVLDGN
ATEETLDVIRLTAEGIYYSADCAIGYEAAKLVLKCIDGCEDDFRSHMERGFCSCNSNQPVACVKSCPAGVDIPGYIALVH
EGRYADAVRLIRRDNPMPTTCAYICEHPCENRCKRTLIDAPVNIRGLKKMAVDNAGDVPVPACNEPTGKKVAIIGGGPGG
LSAAYYLALMGHKVTIFEQRKQLGGMLRYGIPNYRLPRKKLDAEINSILSTGIEVKKNISVGTDITLEDINKEYNAVYIS
IGAHADKKIGIDGEDAKTGVISAVEMLRAIGDDEMPDYTGKRVVVIGGGNVAMDVARSSVRLGAEKVSIVYRRRKADMTA
LPEEVEGAEAEGCDVLELMSPVRIEKDENDAAVGLWVQPQMISRIKGGRPSPKTAAKDEVLIPCDLIVVAIGQGIETRYF
EEHGVTVKRGTIEALDTSEIKERKGIFAGGDCVTGPATVIRAIAAGKVAAANIDEYLGYHHEITSDVEIPYAGYEDKVPC
GRVEVALRDAADRKKDFEPIEYGFSCEEACQESGRCLRCDHFGFGSFRGGREKQW
>Mature_615_residues
MERELSRLTIITKDKAQVTMESLYQDLERRIVASPPGLCTIDLTRSFIKMCLAQSCGKCVPCRVGLRQLARLFDDVLDGN
ATEETLDVIRLTAEGIYYSADCAIGYEAAKLVLKCIDGCEDDFRSHMERGFCSCNSNQPVACVKSCPAGVDIPGYIALVH
EGRYADAVRLIRRDNPMPTTCAYICEHPCENRCKRTLIDAPVNIRGLKKMAVDNAGDVPVPACNEPTGKKVAIIGGGPGG
LSAAYYLALMGHKVTIFEQRKQLGGMLRYGIPNYRLPRKKLDAEINSILSTGIEVKKNISVGTDITLEDINKEYNAVYIS
IGAHADKKIGIDGEDAKTGVISAVEMLRAIGDDEMPDYTGKRVVVIGGGNVAMDVARSSVRLGAEKVSIVYRRRKADMTA
LPEEVEGAEAEGCDVLELMSPVRIEKDENDAAVGLWVQPQMISRIKGGRPSPKTAAKDEVLIPCDLIVVAIGQGIETRYF
EEHGVTVKRGTIEALDTSEIKERKGIFAGGDCVTGPATVIRAIAAGKVAAANIDEYLGYHHEITSDVEIPYAGYEDKVPC
GRVEVALRDAADRKKDFEPIEYGFSCEEACQESGRCLRCDHFGFGSFRGGREKQW

Specific function: Unknown

COG id: COG0493

COG function: function code ER; NADPH-dependent glutamate synthase beta chain and related oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Homo sapiens, GI119943098, Length=458, Percent_Identity=27.292576419214, Blast_Score=156, Evalue=4e-38,
Organism=Escherichia coli, GI87082180, Length=425, Percent_Identity=34.1176470588235, Blast_Score=202, Evalue=5e-53,
Organism=Escherichia coli, GI1789606, Length=421, Percent_Identity=33.2541567695962, Blast_Score=201, Evalue=8e-53,
Organism=Escherichia coli, GI1788811, Length=418, Percent_Identity=32.5358851674641, Blast_Score=193, Evalue=3e-50,
Organism=Escherichia coli, GI1789243, Length=469, Percent_Identity=31.1300639658849, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1788468, Length=402, Percent_Identity=32.3383084577114, Blast_Score=177, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI71984108, Length=460, Percent_Identity=28.695652173913, Blast_Score=155, Evalue=5e-38,
Organism=Caenorhabditis elegans, GI17570289, Length=427, Percent_Identity=29.5081967213115, Blast_Score=151, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17543860, Length=155, Percent_Identity=30.9677419354839, Blast_Score=76, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6320030, Length=424, Percent_Identity=28.5377358490566, Blast_Score=145, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24665547, Length=437, Percent_Identity=29.7482837528604, Blast_Score=179, Evalue=5e-45,
Organism=Drosophila melanogaster, GI24665543, Length=437, Percent_Identity=29.7482837528604, Blast_Score=179, Evalue=5e-45,
Organism=Drosophila melanogaster, GI28574881, Length=437, Percent_Identity=29.7482837528604, Blast_Score=179, Evalue=5e-45,
Organism=Drosophila melanogaster, GI24665539, Length=437, Percent_Identity=29.7482837528604, Blast_Score=179, Evalue=5e-45,
Organism=Drosophila melanogaster, GI24640763, Length=434, Percent_Identity=29.2626728110599, Blast_Score=167, Evalue=2e-41,
Organism=Drosophila melanogaster, GI18858217, Length=434, Percent_Identity=29.2626728110599, Blast_Score=167, Evalue=2e-41,
Organism=Drosophila melanogaster, GI17137178, Length=160, Percent_Identity=30, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR013027
- InterPro:   IPR012285
- InterPro:   IPR006006
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00037 Fer4; PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 67109; Mature: 67109

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERELSRLTIITKDKAQVTMESLYQDLERRIVASPPGLCTIDLTRSFIKMCLAQSCGKCV
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCC
PCRVGLRQLARLFDDVLDGNATEETLDVIRLTAEGIYYSADCAIGYEAAKLVLKCIDGCE
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCH
DDFRSHMERGFCSCNSNQPVACVKSCPAGVDIPGYIALVHEGRYADAVRLIRRDNPMPTT
HHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCHH
CAYICEHPCENRCKRTLIDAPVNIRGLKKMAVDNAGDVPVPACNEPTGKKVAIIGGGPGG
HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCH
LSAAYYLALMGHKVTIFEQRKQLGGMLRYGIPNYRLPRKKLDAEINSILSTGIEVKKNIS
HHHHHHHHHHCCEEEHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
VGTDITLEDINKEYNAVYISIGAHADKKIGIDGEDAKTGVISAVEMLRAIGDDEMPDYTG
CCCCEEHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
KRVVVIGGGNVAMDVARSSVRLGAEKVSIVYRRRKADMTALPEEVEGAEAEGCDVLELMS
CEEEEEECCCEEEHHHHHHHHHCHHHHHHHHHHHHCCHHCCCHHHCCCCCCCCCHHHHHC
PVRIEKDENDAAVGLWVQPQMISRIKGGRPSPKTAAKDEVLIPCDLIVVAIGQGIETRYF
CCEEECCCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCEEECHHEEEEECCCCCCHHHH
EEHGVTVKRGTIEALDTSEIKERKGIFAGGDCVTGPATVIRAIAAGKVAAANIDEYLGYH
HHCCCEEECCCEECCCHHHHHHHCCCEECCCCCCCHHHHHHHHHHCCHHCCCHHHHCCCC
HEITSDVEIPYAGYEDKVPCGRVEVALRDAADRKKDFEPIEYGFSCEEACQESGRCLRCD
CCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCHHHCCCCHHHHHHHCCCEEEEE
HFGFGSFRGGREKQW
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MERELSRLTIITKDKAQVTMESLYQDLERRIVASPPGLCTIDLTRSFIKMCLAQSCGKCV
CCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCC
PCRVGLRQLARLFDDVLDGNATEETLDVIRLTAEGIYYSADCAIGYEAAKLVLKCIDGCE
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCH
DDFRSHMERGFCSCNSNQPVACVKSCPAGVDIPGYIALVHEGRYADAVRLIRRDNPMPTT
HHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCHH
CAYICEHPCENRCKRTLIDAPVNIRGLKKMAVDNAGDVPVPACNEPTGKKVAIIGGGPGG
HHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCH
LSAAYYLALMGHKVTIFEQRKQLGGMLRYGIPNYRLPRKKLDAEINSILSTGIEVKKNIS
HHHHHHHHHHCCEEEHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
VGTDITLEDINKEYNAVYISIGAHADKKIGIDGEDAKTGVISAVEMLRAIGDDEMPDYTG
CCCCEEHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
KRVVVIGGGNVAMDVARSSVRLGAEKVSIVYRRRKADMTALPEEVEGAEAEGCDVLELMS
CEEEEEECCCEEEHHHHHHHHHCHHHHHHHHHHHHCCHHCCCHHHCCCCCCCCCHHHHHC
PVRIEKDENDAAVGLWVQPQMISRIKGGRPSPKTAAKDEVLIPCDLIVVAIGQGIETRYF
CCEEECCCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCEEECHHEEEEECCCCCCHHHH
EEHGVTVKRGTIEALDTSEIKERKGIFAGGDCVTGPATVIRAIAAGKVAAANIDEYLGYH
HHCCCEEECCCEECCCHHHHHHHCCCEECCCCCCCHHHHHHHHHHCCHHCCCHHHHCCCC
HEITSDVEIPYAGYEDKVPCGRVEVALRDAADRKKDFEPIEYGFSCEEACQESGRCLRCD
CCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHCCCCCHHHCCCCHHHHHHHCCCEEEEE
HFGFGSFRGGREKQW
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]