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The map label for this gene is yrdC [H]

Identifier: 238896779

GI number: 238896779

Start: 4762294

End: 4762911

Strand: Reverse

Name: yrdC [H]

Synonym: KP1_5001

Alternate gene names: 238896779

Gene position: 4762911-4762294 (Counterclockwise)

Preceding gene: 238896780

Following gene: 238896778

Centisome position: 90.75

GC content: 57.61

Gene sequence:

>618_bases
GTGCCAGTAAACAATGTGGAAAGCCGATCCCGGCGGAATAAATCAGTGAACAATAACCTGCCCTCAGAAGCCGTCGCCCA
TGCCGTGGCGGTCCTGAAAAATGAACATGTCATCGCCTATCCCACCGAAGCCGTGTTTGGCGTCGGCTGCGACCCTGACA
GCGAAACGGCCGTTATGCGCCTGCTGGAGCTGAAGCAGCGTCCCGTTGAGAAAGGATTGATCCTTATCGCCGCCAGCTTT
GAGCAACTGAAGCCCTATATTGATGATTCACGGTTAAGTGACTCACAGCGGGAAGCCATCTTCTCTTGCTGGCCGGGACC
GGTGACGTTTGTATTCCCGGCGCGTCCTGAAACGCCGCGCTGGCTGACAGGACGTTTTGATTCACTGGCCGTACGCGTGA
CTAACCATCCGCTGGTAATCGAATTGTGCGAAGCCTACGGAAAACCACTGGTTTCGACCAGCGCCAATCTCACCGGGCAA
CCACCGTGCCGTACTACCGCAGAGGTCCATGCTCAGTTTGGCGACAGCTTCCCGGTGGTGGATGGCGCCACGGGCGGCCG
GCAAAACCCATCTGAAATCCGTGATGCCCTGACGGGTGAACTGTTCCGCCAGGGGTGA

Upstream 100 bases:

>100_bases
CAGTTCGTTATCAATTTTAAACCGGTGGCGGGCGAATGCCCTGAATGCCATTACCCGCTGTTAATAGAAAAGAAGACGGC
GCAGGGGCTCAGACGCTTCT

Downstream 100 bases:

>100_bases
ACCATGGAAACCTATGCCGTTTTTGGTAATCCGATCGCGCACAGCAAGTCGCCTGCTATTCATCAGCTGTTTGCCCGCCA
GTTAGGAATTACTCATCCTT

Product: putative ribosome maturation factor

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MPVNNVESRSRRNKSVNNNLPSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASF
EQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPETPRWLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSANLTGQ
PPCRTTAEVHAQFGDSFPVVDGATGGRQNPSEIRDALTGELFRQG

Sequences:

>Translated_205_residues
MPVNNVESRSRRNKSVNNNLPSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASF
EQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPETPRWLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSANLTGQ
PPCRTTAEVHAQFGDSFPVVDGATGGRQNPSEIRDALTGELFRQG
>Mature_204_residues
PVNNVESRSRRNKSVNNNLPSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVEKGLILIAASFE
QLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPETPRWLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSANLTGQP
PCRTTAEVHAQFGDSFPVVDGATGGRQNPSEIRDALTGELFRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=190, Percent_Identity=80.5263157894737, Blast_Score=318, Evalue=2e-88,
Organism=Escherichia coli, GI87081864, Length=143, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17537239, Length=159, Percent_Identity=31.4465408805031, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321269, Length=190, Percent_Identity=25.7894736842105, Blast_Score=69, Evalue=5e-13,
Organism=Drosophila melanogaster, GI78707274, Length=191, Percent_Identity=28.7958115183246, Blast_Score=68, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22441; Mature: 22309

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVNNVESRSRRNKSVNNNLPSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMR
CCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHEEECCCCCCHHHHHHH
LLELKQRPVEKGLILIAASFEQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPETPR
HHHHHHCCHHCCEEEEEECHHHHCCCCCCCCCCCHHHHHHEEECCCCEEEEECCCCCCCC
WLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSANLTGQPPCRTTAEVHAQFGDSFPVV
EECCCCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCE
DGATGGRQNPSEIRDALTGELFRQG
ECCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PVNNVESRSRRNKSVNNNLPSEAVAHAVAVLKNEHVIAYPTEAVFGVGCDPDSETAVMR
CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEECCHHEEECCCCCCHHHHHHH
LLELKQRPVEKGLILIAASFEQLKPYIDDSRLSDSQREAIFSCWPGPVTFVFPARPETPR
HHHHHHCCHHCCEEEEEECHHHHCCCCCCCCCCCHHHHHHEEECCCCEEEEECCCCCCCC
WLTGRFDSLAVRVTNHPLVIELCEAYGKPLVSTSANLTGQPPCRTTAEVHAQFGDSFPVV
EECCCCCEEEEEECCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHCCCCCCCE
DGATGGRQNPSEIRDALTGELFRQG
ECCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA