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The map label for this gene is yrdD [H]

Identifier: 238896780

GI number: 238896780

Start: 4762871

End: 4763413

Strand: Reverse

Name: yrdD [H]

Synonym: KP1_5002

Alternate gene names: 238896780

Gene position: 4763413-4762871 (Counterclockwise)

Preceding gene: 238896781

Following gene: 238896779

Centisome position: 90.76

GC content: 54.51

Gene sequence:

>543_bases
ATGACCAAATCAGCACTGTTTTCGGTGCGTAAAAATGAGCCCTGCCCGCAGTGCGGGGCCGAACTGGTGATCCGTTCCGG
GAAACATGGCCCGTTTCTCGGCTGTTCGCATTATCCGGACTGTGACTATATTCGTCCCCTGAAAAGCCAGGCGGACGGGC
ATATCGTTAAGGTGCTGGAGGGGCAAGAGTGCCCATCGTGCGGTGCGGTTATGGTGTTACGCCAGGGGCGTTTTGGGATG
TTCATTGGCTGTAGCCGCTATCCGGAATGTGAACATACCGAGCTGATTGATAAACCCGATGAGACGGCTATCGCTTGCCC
GCAGTGCGGACAAGGCCATCTGGTCCAGCGTCGTTCCCGTTTCGGTAAAACCTTTCACTCCTGCGATCGCTATCCTGATT
GCCAGTTCGTTATCAATTTTAAACCGGTGGCGGGCGAATGCCCTGAATGCCATTACCCGCTGTTAATAGAAAAGAAGACG
GCGCAGGGGCTCAGACGCTTCTGTGCCAGTAAACAATGTGGAAAGCCGATCCCGGCGGAATAA

Upstream 100 bases:

>100_bases
TTCCGGGCTGTGAAAACGCCTATCAGCAAATGGAAGAATTACTCTTCGAAGTAAATGAAGGTATGCTGCATTAATCTTTT
TGCAGCAACATCGAGTTGTT

Downstream 100 bases:

>100_bases
ATCAGTGAACAATAACCTGCCCTCAGAAGCCGTCGCCCATGCCGTGGCGGTCCTGAAAAATGAACATGTCATCGCCTATC
CCACCGAAGCCGTGTTTGGC

Product: putative DNA topoisomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MTKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSHYPDCDYIRPLKSQADGHIVKVLEGQECPSCGAVMVLRQGRFGM
FIGCSRYPECEHTELIDKPDETAIACPQCGQGHLVQRRSRFGKTFHSCDRYPDCQFVINFKPVAGECPECHYPLLIEKKT
AQGLRRFCASKQCGKPIPAE

Sequences:

>Translated_180_residues
MTKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSHYPDCDYIRPLKSQADGHIVKVLEGQECPSCGAVMVLRQGRFGM
FIGCSRYPECEHTELIDKPDETAIACPQCGQGHLVQRRSRFGKTFHSCDRYPDCQFVINFKPVAGECPECHYPLLIEKKT
AQGLRRFCASKQCGKPIPAE
>Mature_179_residues
TKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSHYPDCDYIRPLKSQADGHIVKVLEGQECPSCGAVMVLRQGRFGMF
IGCSRYPECEHTELIDKPDETAIACPQCGQGHLVQRRSRFGKTFHSCDRYPDCQFVINFKPVAGECPECHYPLLIEKKTA
QGLRRFCASKQCGKPIPAE

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=180, Percent_Identity=85, Blast_Score=325, Evalue=9e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20051; Mature: 19920

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
8.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSHYPDCDYIRPLKSQADGHIVKVLE
CCCHHHHHCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEC
GQECPSCGAVMVLRQGRFGMFIGCSRYPECEHTELIDKPDETAIACPQCGQGHLVQRRSR
CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHCCCCCCCEEECCCCCCCHHHHHHHH
FGKTFHSCDRYPDCQFVINFKPVAGECPECHYPLLIEKKTAQGLRRFCASKQCGKPIPAE
HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSHYPDCDYIRPLKSQADGHIVKVLE
CCHHHHHCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHCCCCCCEEEEEC
GQECPSCGAVMVLRQGRFGMFIGCSRYPECEHTELIDKPDETAIACPQCGQGHLVQRRSR
CCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHCCCCCCCEEECCCCCCCHHHHHHHH
FGKTFHSCDRYPDCQFVINFKPVAGECPECHYPLLIEKKTAQGLRRFCASKQCGKPIPAE
HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]