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The map label for this gene is ygdH [H]

Identifier: 238896257

GI number: 238896257

Start: 4234886

End: 4236253

Strand: Direct

Name: ygdH [H]

Synonym: KP1_4410

Alternate gene names: 238896257

Gene position: 4234886-4236253 (Clockwise)

Preceding gene: 238896256

Following gene: 238896258

Centisome position: 80.69

GC content: 59.28

Gene sequence:

>1368_bases
TTGATTACACATGTTAGCCCGCTTGGTTCAATGGATATGCTGTCGCAGCTGGAAGTGGATATGCTTAAGCGCACCGCCAG
CAGCGACCTGTACCAACTCTTTCGCAACTGCTCGCTTGCTGTGCTCAATTCGGGGAGCCTGACCGATAACAGCAAGGAGC
TCCTGTCCCGTTTCGAAAATTTCGAGATTAACGTGCTGCGGCGCGAACGCGGCGTGAAGCTGGAACTGATCAACCCGCCG
GAAGACGCCTTCGTTGACGGGCGGATTATCCGCTCCCTGCAGGCCAACCTGTTCGCCGTGCTGCGCGATATCCTGTTTGT
TTACGGCCAGATCCACAATACCGTTCGCTTCCCGAACCTCGATCTCGAAAGTTCGGTTCATATCACTAACCTGGTGTTCT
CGATCCTGCGCAACGCCCGCGCGCTGCACGTCGGCGAGGCGCCGAACATGATCGTCTGCTGGGGCGGCCACTCCATCAAC
GAAAACGAATATCTCTACGCCCGCCGCGTCGGTACGCAGCTGGGCCTGCGGGAACTGAATATCTGCACCGGCTGCGGGCC
TGGCGCAATGGAGGCGCCGATGAAAGGCGCCGCCGTCGGCCATGCGCAGCAGCGCTACAAAGACAGCCGCTTTATCGGCA
TGACCGAACCATCCATTATCGCTGCGGAACCACCGAACCCGCTGGTCAATGAACTGATCATCATGCCGGATATCGAAAAG
CGTCTGGAGGCCTTCGTACGTATCGCCCACGGGATCATTATTTTCCCGGGCGGCGTCGGCACTGCCGAAGAGCTGCTCTA
CCTGCTGGGTATTCTGATGCACCCCGACAACAAAGCGCAGGTGCTGCCGCTGATCCTCACCGGGCCGAAGGAGAGCGCCG
ACTACTTCCGCGTACTGGACGAGTTTATCACCCATACCCTGGGCGAATCGGCCCGTCGCCACTACCGGATCATCATTGAC
GACCCCGCGGAAGTGGCGCGGCAGATGAAAAAAGCGATGCCGCTGGTGAAAGAGAGCCGTCGCGAGACCGATGACGCCTA
TAGCTTTAACTGGTCGATTCGCATCTCGCCGGACCTGCAGATGCCGTTTGATCCGACCCACGAGAACATGGCCAACCTCA
AACTCTCCCCGGATCAGCCGGTGGAAGTGCTGGCCGCCGACCTGCGTCGCGCCTTCTCCGGGATTGTCGCGGGGAACGTC
AAAGAGGTGGGCATCCAGGCCATTGAGCAGTACGGTCCTTACAAACTGCACGGCGATCCGGAGATGATGCGCCGTATGGA
CGATCTGCTGCAGGGCTTCGTCGCCCAGCACCGCATGAAGCTTCCGGGCGGCACCGCCTATATTCCTTGCTACGAAATCA
TCGCCTGA

Upstream 100 bases:

>100_bases
ACAATTTGCGTGCGTTTAGGCGCGCGCAAGGTTGTGGAAACGCCGTTCGCAGGGCTATTGTAATCACAGGAAGACCATAA
GCGTCCTGTAAGGAGTTCAC

Downstream 100 bases:

>100_bases
TTTCCCCCTCTCCCGCCGGGGCATCGCCTGACGCCTGCCCCCGGCGGGCTCTCTTCCTCTGACTTCCAGAACGCGCTAAA
AACCTTTCTGTTACTAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MITHVSPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFEINVLRRERGVKLELINPP
EDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNLDLESSVHITNLVFSILRNARALHVGEAPNMIVCWGGHSIN
ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMHPDNKAQVLPLILTGPKESADYFRVLDEFITHTLGESARRHYRIIID
DPAEVARQMKKAMPLVKESRRETDDAYSFNWSIRISPDLQMPFDPTHENMANLKLSPDQPVEVLAADLRRAFSGIVAGNV
KEVGIQAIEQYGPYKLHGDPEMMRRMDDLLQGFVAQHRMKLPGGTAYIPCYEIIA

Sequences:

>Translated_455_residues
MITHVSPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFEINVLRRERGVKLELINPP
EDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNLDLESSVHITNLVFSILRNARALHVGEAPNMIVCWGGHSIN
ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMHPDNKAQVLPLILTGPKESADYFRVLDEFITHTLGESARRHYRIIID
DPAEVARQMKKAMPLVKESRRETDDAYSFNWSIRISPDLQMPFDPTHENMANLKLSPDQPVEVLAADLRRAFSGIVAGNV
KEVGIQAIEQYGPYKLHGDPEMMRRMDDLLQGFVAQHRMKLPGGTAYIPCYEIIA
>Mature_455_residues
MITHVSPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFENFEINVLRRERGVKLELINPP
EDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNLDLESSVHITNLVFSILRNARALHVGEAPNMIVCWGGHSIN
ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMHPDNKAQVLPLILTGPKESADYFRVLDEFITHTLGESARRHYRIIID
DPAEVARQMKKAMPLVKESRRETDDAYSFNWSIRISPDLQMPFDPTHENMANLKLSPDQPVEVLAADLRRAFSGIVAGNV
KEVGIQAIEQYGPYKLHGDPEMMRRMDDLLQGFVAQHRMKLPGGTAYIPCYEIIA

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=453, Percent_Identity=92.4944812362031, Blast_Score=871, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 51001; Mature: 51001

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITHVSPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFEN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCC
FEINVLRRERGVKLELINPPEDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNL
CEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCC
DLESSVHITNLVFSILRNARALHVGEAPNMIVCWGGHSINENEYLYARRVGTQLGLRELN
CCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHCHHHEE
ICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
EECCCCCCCCCCCCCCCHHCHHHHHHCCCCEEECCCCCEEEECCCCHHHHHEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMHPDNKAQVLPLILTGPKESADYFRVLD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHH
EFITHTLGESARRHYRIIIDDPAEVARQMKKAMPLVKESRRETDDAYSFNWSIRISPDLQ
HHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCHHHHHHHCCCCCCEEEEEEEEECCCCC
MPFDPTHENMANLKLSPDQPVEVLAADLRRAFSGIVAGNVKEVGIQAIEQYGPYKLHGDP
CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCH
EMMRRMDDLLQGFVAQHRMKLPGGTAYIPCYEIIA
HHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHCC
>Mature Secondary Structure
MITHVSPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNSGSLTDNSKELLSRFEN
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCC
FEINVLRRERGVKLELINPPEDAFVDGRIIRSLQANLFAVLRDILFVYGQIHNTVRFPNL
CEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCC
DLESSVHITNLVFSILRNARALHVGEAPNMIVCWGGHSINENEYLYARRVGTQLGLRELN
CCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHCHHHEE
ICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPSIIAAEPPNPLVNELIIMPDIEK
EECCCCCCCCCCCCCCCHHCHHHHHHCCCCEEECCCCCEEEECCCCHHHHHEEECCCHHH
RLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMHPDNKAQVLPLILTGPKESADYFRVLD
HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHH
EFITHTLGESARRHYRIIIDDPAEVARQMKKAMPLVKESRRETDDAYSFNWSIRISPDLQ
HHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHCHHHHHHHCCCCCCEEEEEEEEECCCCC
MPFDPTHENMANLKLSPDQPVEVLAADLRRAFSGIVAGNVKEVGIQAIEQYGPYKLHGDP
CCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEECCCH
EMMRRMDDLLQGFVAQHRMKLPGGTAYIPCYEIIA
HHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]