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The map label for this gene is fim [H]

Identifier: 238896111

GI number: 238896111

Start: 4084290

End: 4084952

Strand: Reverse

Name: fim [H]

Synonym: KP1_4250

Alternate gene names: 238896111

Gene position: 4084952-4084290 (Counterclockwise)

Preceding gene: 238896112

Following gene: 238896110

Centisome position: 77.83

GC content: 56.26

Gene sequence:

>663_bases
ATGATGAAGAAAATAATTGCCGTTGCGGCTTTTCTGCTGTGCACCACGGCAGCGCAGGCCGGTATTGTCATGGGTGGAAC
CCGTGTGATTTATCAGGAAGGGAAGCGTGAAGCCGCTATTTCAGTCACCAATGCCGATACCCATACGCCCTATCTGGTGC
AGTCGTGGGTGGAAAATTACGCGGAAAACGATAAGGCCAGGGTGCCCTTCATTGTAACGCCGCCCTTGTTCCGTCTCGAT
CCGGAGCAAAATAACGTTCTGCGGATTAACTTTATTGGCGCCTCGCTGCCCCGCGACCGTGAATCGGTCTTCTGGCTGAA
CGTCAAAAGTATCGCCCCGACGCGTCAGGGCGAGGTGAATAAGCTGCAGGTGAATATTAAATCGAAATTCAAAATCTTCT
ATCGCCCCAACGACCTGGCGGGCGACCCGGCAAAGGCCTGGCAGCAGCTGAAGTTTAGCCAGTCCGGCGGTCGGCTGACG
GTGATAAATCCCACTCCCTACTTCGTCTCTTTTTACGCCGTCGAGGTGGGCGGGCAAAGCATCGACGATCCCGGCATGGT
GGCTCCCTTCGGCGAGAAAACGTGGCCGGTGAGCGGGCACGGCACCGTCAAATGGCGGGCGATTAACGACTACGGCGGCG
TCAGCGATTTCGCCCAGCAGTAA

Upstream 100 bases:

>100_bases
TGACGGTATAGTTGTTTTTGCTAATTATCCCGTCGAGTACTGGCTCTGTTATTCACTGCTTTATTTTGTTGTCTGTTCAA
CTTTTACCTGATGGTAAGTC

Downstream 100 bases:

>100_bases
TTCCCCTTTTTGATTAGCTTACCGGACGGCGCCAGCATGAAAAGAATAACAACAGCCAGGGTGCGGGAGTATGCCTTGTT
GCCCGTTACCGCCGGGCGGG

Product: putative chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MMKKIIAVAAFLLCTTAAQAGIVMGGTRVIYQEGKREAAISVTNADTHTPYLVQSWVENYAENDKARVPFIVTPPLFRLD
PEQNNVLRINFIGASLPRDRESVFWLNVKSIAPTRQGEVNKLQVNIKSKFKIFYRPNDLAGDPAKAWQQLKFSQSGGRLT
VINPTPYFVSFYAVEVGGQSIDDPGMVAPFGEKTWPVSGHGTVKWRAINDYGGVSDFAQQ

Sequences:

>Translated_220_residues
MMKKIIAVAAFLLCTTAAQAGIVMGGTRVIYQEGKREAAISVTNADTHTPYLVQSWVENYAENDKARVPFIVTPPLFRLD
PEQNNVLRINFIGASLPRDRESVFWLNVKSIAPTRQGEVNKLQVNIKSKFKIFYRPNDLAGDPAKAWQQLKFSQSGGRLT
VINPTPYFVSFYAVEVGGQSIDDPGMVAPFGEKTWPVSGHGTVKWRAINDYGGVSDFAQQ
>Mature_220_residues
MMKKIIAVAAFLLCTTAAQAGIVMGGTRVIYQEGKREAAISVTNADTHTPYLVQSWVENYAENDKARVPFIVTPPLFRLD
PEQNNVLRINFIGASLPRDRESVFWLNVKSIAPTRQGEVNKLQVNIKSKFKIFYRPNDLAGDPAKAWQQLKFSQSGGRLT
VINPTPYFVSFYAVEVGGQSIDDPGMVAPFGEKTWPVSGHGTVKWRAINDYGGVSDFAQQ

Specific function: Could be required for the biogenesis of the putative yraH fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789532, Length=225, Percent_Identity=41.3333333333333, Blast_Score=166, Evalue=9e-43,
Organism=Escherichia coli, GI1790771, Length=203, Percent_Identity=41.3793103448276, Blast_Score=165, Evalue=2e-42,
Organism=Escherichia coli, GI1787171, Length=216, Percent_Identity=36.1111111111111, Blast_Score=150, Evalue=5e-38,
Organism=Escherichia coli, GI1786743, Length=225, Percent_Identity=38.6666666666667, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1786333, Length=228, Percent_Identity=36.4035087719298, Blast_Score=133, Evalue=8e-33,
Organism=Escherichia coli, GI87081806, Length=230, Percent_Identity=33.4782608695652, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI87082203, Length=225, Percent_Identity=30.2222222222222, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1788677, Length=147, Percent_Identity=36.734693877551, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788428, Length=224, Percent_Identity=27.6785714285714, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786936, Length=217, Percent_Identity=29.0322580645161, Blast_Score=94, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 24397; Mature: 24397

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKIIAVAAFLLCTTAAQAGIVMGGTRVIYQEGKREAAISVTNADTHTPYLVQSWVENY
CHHHHHHHHHHHHHHHHHHCCEEECCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHH
AENDKARVPFIVTPPLFRLDPEQNNVLRINFIGASLPRDRESVFWLNVKSIAPTRQGEVN
HCCCCCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCE
KLQVNIKSKFKIFYRPNDLAGDPAKAWQQLKFSQSGGRLTVINPTPYFVSFYAVEVGGQS
EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCCC
IDDPGMVAPFGEKTWPVSGHGTVKWRAINDYGGVSDFAQQ
CCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCC
>Mature Secondary Structure
MMKKIIAVAAFLLCTTAAQAGIVMGGTRVIYQEGKREAAISVTNADTHTPYLVQSWVENY
CHHHHHHHHHHHHHHHHHHCCEEECCEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHH
AENDKARVPFIVTPPLFRLDPEQNNVLRINFIGASLPRDRESVFWLNVKSIAPTRQGEVN
HCCCCCCCCEEECCCCEEECCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCE
KLQVNIKSKFKIFYRPNDLAGDPAKAWQQLKFSQSGGRLTVINPTPYFVSFYAVEVGGQS
EEEEEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCCC
IDDPGMVAPFGEKTWPVSGHGTVKWRAINDYGGVSDFAQQ
CCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]