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The map label for this gene is lpfA [H]

Identifier: 238896112

GI number: 238896112

Start: 4085147

End: 4085728

Strand: Reverse

Name: lpfA [H]

Synonym: KP1_4251

Alternate gene names: 238896112

Gene position: 4085728-4085147 (Counterclockwise)

Preceding gene: 238896113

Following gene: 238896111

Centisome position: 77.85

GC content: 55.33

Gene sequence:

>582_bases
ATGAAAAAACAACCTCGCTTTATAACCATCCTCATAGGAGCGCTGCTTTCTGGCGTAGCCTTGCAGGCTACCGCGGCCAA
CACTATCAATCCTGACTCGGGCACCAGTTCGGAAGGCGCCGGCGGGCAGGTCATCTTCAATGGGTCAATCACCGACAGCT
CTTGCAACGTCGATAGTAGTTCTAATGGCCAGAAGGTTGATCTGGGCAAATGGGCCAGCAACTATTTTACCGGCACTGGT
TTTGAAACCACCAAAACCCCCTTCCATATCAAAGTGAAAGATTGCCCGGCCAGCGTGACTACGGTCGCCGTGCTGTTTGA
CGGCGCGCGCGATCAGTCTGATAACTCCCTGCTGGCCATCAACGGCGGCGCCAGCGGCGTAGCGATTAAGCTGTATGAGC
ACGATCGGTCGACGGCTGTCAGCCTCGGTAAAACGTCAGCCAAACAGACGGTCACTCCGGGTACCAGCGGCGGCACCGGC
TCTGCCGACCTCGAGTTTTACGCCGACTATATCTCCACCGCGGCGACCGTGACGGCAGGTAAAGCCGACGGTACAGCTAA
TTTCAATATGATTTATAACTGA

Upstream 100 bases:

>100_bases
GCAATGTACATTTACAGGGAGGAGCTGACGAGCCGTTTCGCGATAGCTTTGGGGCTATTGTCGATGATGGAAAATATGTT
CGTTAACGATGAGATAAATA

Downstream 100 bases:

>100_bases
TCTAATTGCGCGTTATTCAGAGTCAGCCCACTGCGTCTTGATTAATTACAGATAGCTAATGTGTTAATTGTCATGAAGTC
ACGAAATATATTCGTGACGG

Product: putative fimbrial-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKKQPRFITILIGALLSGVALQATAANTINPDSGTSSEGAGGQVIFNGSITDSSCNVDSSSNGQKVDLGKWASNYFTGTG
FETTKTPFHIKVKDCPASVTTVAVLFDGARDQSDNSLLAINGGASGVAIKLYEHDRSTAVSLGKTSAKQTVTPGTSGGTG
SADLEFYADYISTAATVTAGKADGTANFNMIYN

Sequences:

>Translated_193_residues
MKKQPRFITILIGALLSGVALQATAANTINPDSGTSSEGAGGQVIFNGSITDSSCNVDSSSNGQKVDLGKWASNYFTGTG
FETTKTPFHIKVKDCPASVTTVAVLFDGARDQSDNSLLAINGGASGVAIKLYEHDRSTAVSLGKTSAKQTVTPGTSGGTG
SADLEFYADYISTAATVTAGKADGTANFNMIYN
>Mature_193_residues
MKKQPRFITILIGALLSGVALQATAANTINPDSGTSSEGAGGQVIFNGSITDSSCNVDSSSNGQKVDLGKWASNYFTGTG
FETTKTPFHIKVKDCPASVTTVAVLFDGARDQSDNSLLAINGGASGVAIKLYEHDRSTAVSLGKTSAKQTVTPGTSGGTG
SADLEFYADYISTAATVTAGKADGTANFNMIYN

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1786746, Length=150, Percent_Identity=34, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI87082421, Length=197, Percent_Identity=27.4111675126904, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790773, Length=157, Percent_Identity=31.2101910828025, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081753, Length=159, Percent_Identity=31.4465408805031, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 19777; Mature: 19777

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQPRFITILIGALLSGVALQATAANTINPDSGTSSEGAGGQVIFNGSITDSSCNVDSS
CCCCCCEEEEEHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
SNGQKVDLGKWASNYFTGTGFETTKTPFHIKVKDCPASVTTVAVLFDGARDQSDNSLLAI
CCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEE
NGGASGVAIKLYEHDRSTAVSLGKTSAKQTVTPGTSGGTGSADLEFYADYISTAATVTAG
ECCCCCEEEEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHEEEEEC
KADGTANFNMIYN
CCCCCEEEEEEEC
>Mature Secondary Structure
MKKQPRFITILIGALLSGVALQATAANTINPDSGTSSEGAGGQVIFNGSITDSSCNVDSS
CCCCCCEEEEEHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
SNGQKVDLGKWASNYFTGTGFETTKTPFHIKVKDCPASVTTVAVLFDGARDQSDNSLLAI
CCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEE
NGGASGVAIKLYEHDRSTAVSLGKTSAKQTVTPGTSGGTGSADLEFYADYISTAATVTAG
ECCCCCEEEEEEECCCCEEEECCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHEEEEEC
KADGTANFNMIYN
CCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]