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The map label for this gene is fimD [H]

Identifier: 238896110

GI number: 238896110

Start: 4081698

End: 4084253

Strand: Reverse

Name: fimD [H]

Synonym: KP1_4249

Alternate gene names: 238896110

Gene position: 4084253-4081698 (Counterclockwise)

Preceding gene: 238896111

Following gene: 238896109

Centisome position: 77.82

GC content: 62.28

Gene sequence:

>2556_bases
ATGAAAAGAATAACAACAGCCAGGGTGCGGGAGTATGCCTTGTTGCCCGTTACCGCCGGGCGGGCGGTGGCGCTGGCGAC
GGTGCCGACGATGATGTTTTGTCTCAGTCCGTTGAGCCGGGCGATGGCCGACGACTATTTTGACCCGGCGGCGCTGGAGT
TTGCTGACCCGCAGCAGCAAACCTCCGATCTGCACTACTTCGCCAAACCCGGCGGCCAGCAGCCGGGGACTTATCCTGTC
ACCGTGGTGGTTAATGACCAGGAGCTGGGTCAGGCTGATATCACGTTTGTTGACGATGGCGGGCAGCTGCGCCCGGTGCT
GACGCCCGGTCAGCTGGCGGAGTATGGCGTCAACGTCAGCGCGTTTCCCGCCTTTCAAGCGCTGCATGAAGGCGAAACCT
TCACCCGGATCGAGAAGTTTATTCCCGACGCCAGCAGTCGGTTCAGCTTCGCTAACCAGCGCCTGACGCTGAGTATTCCC
CAGGCGGCGATGAACGTGCAAAGCCGCGGCTATGTCGATCCGTCGCGCTGGGACGATGGCGTGCCGGCCGCGTTTGTCGA
TTACTATTTTTCCGGCGCGCAAATAAAGAACGCCGACGAAGGGGAGAGCAGCCGCTCAAACTATCTCAATTTACGCAGCG
GCCTCAACCTGGGCGCCTGGCGACTGCGCAACATCTCCTCAATGCAGTATGACCAGCAGCGCCGGCACTGGGATACCCAG
AGCACCTGGCTGCAGCGCGATGTCCGCTCGCTGAAGAGCTTGCTGCGGATCGGCGATACCTATACCACCGGCGATGTGTT
TGACAGCATACAGTTTCGCGGCGTCCAGCTGATGTCTGACGATGAAATGCTCCCGGACAGCCAGCGCGGCTTTGCCCCCA
CCATTCGTGGCGTGGCGCACAGCAATGCTAAAGTGACCGTCTCTCAGCACGGGTATGTGATCTACGAGACCTTTGTGTCG
CCGGGGGCGTTCGCCATCAGCGATCTCTACCCCACCTCGCAGAGCGGCGATCTGGAGGTGAAGGTGACCGAGAGCAATGG
CGCGGTGCGTACCTTTACCCAGCCCTATTCCGCGGTGCCATATATGCTGCGCGAAGGGCGCGGCAAATTCAGTCTCAGCG
CCGGCCGCTACCACTCCGGGGGGGAATCGGTGCGCTCGCCGGAATTTCTGCAGGGCACTTTGTTCTACGGTTTGACGGCG
GGATTCACCCTCTACGGTGGTACGCAGCTGGCCCGGGACTATCAGGCGTGGGCGCTGGGCCTGGGCCGCGGTTTTGGCGA
GTTCGGATCGCTGGGAGGGGATGTCACCCAGGCCGTCACCCGTACGCCGTCGGGCAAGCGCTATACGGGCCATTCGCTGC
GCGCTCAGTATCAGAAAAATTTTGTCAGCTCGGGCACTGCGTTCAGCCTCGCCAGCTATCGCTACTCGTCAAGCGGCTAT
TACGATTTTGCCGAAGCCAGCGCCCTTGAAAGCGCCCAGGGGCAAGTAGACAACCGGCGTCGCCGGGAAGAGCTGTCGGT
GTCGCAAAGCCTTGGTGGCCTGGGCAGTCTGGCGGTTTCCGCCTGGTCGCAGGAGTACTGGCATCGGCAGAGTCGGGATG
AGACGGTGCACCTTGGGTTCTACAGCGCCTGGAAAGGGATCTCCTGGGGCGTGGGCTATTACTACACCCGCGCCAGCGGC
CAGCAAAAAAATGACCGCTCCTGGTCATTCAATATCAATATTCCGCTGGGTGGTCCGCTGTCCGACAGCGCGGTGAGCTA
CAACACCACCTCGGACAGCAATGGCTATACCTCGCAGCAGATGTCGCTGTATGGCGCGGTGCCGACGCGGCCAAATCTGT
TCTACTCGGTTCAGCAAGGTTATGGCAACCAGGGACGAGGCAGCAACAGCAGCGCCTCCCTGGACTACCACGGCGGCTTC
GGCAACGCTCAGATCGGCTATCGCCATGACGCCGCCAGCAACCAGTTGACCTGGGGAGGCGCCGGCTCGGTGGTCGCGCA
TCCGCACGGCGTCACCTTCGGCCAGACGGTGGGTGAGAGCTTCGCCATCGTCCGGGCGCCGGGGGCCGCCGGCGTGGCGG
TGCAAAACGGCAACAATGTGCACACCGACTGGCGCGGCTATGCCGTGGTGCCCTCCCTGACCGCCTACCGGAAAAATGTC
ATTACCCTCGATACGGAGTCGATGGCCGACGACACCGACGTCGACCAGCAGGGGCAGACCGTGATCCCCGGCGGCGGCGC
GGTGGTGATGGCCAACTACCAGACCCACATTGGCAACCGGGTGCTGTTTACCCTGCGCAATGCCCAGGGGCCGCTACCGT
TTGGCGCCAGTGCGCGGCTGGTCGAGGAGGAGGAGAGCGGCAATCCGTCGGGCGGCATGGTGGCCGACGGCGGCCAGGTG
TATCTCAGCGGTGTGCCGCAGGAGGGAACCCTGGCGGTGAGTTGGATCGTCAACAATCAGTCGCAGAGCTGCACGCTGCA
TTTTCATCTTCCGGATAACCCACAGCAGAGTCTGAATACGGTGAAAACCGTCTCCGGACTGTGCCAGACACGCTGA

Upstream 100 bases:

>100_bases
CGGCACCGTCAAATGGCGGGCGATTAACGACTACGGCGGCGTCAGCGATTTCGCCCAGCAGTAATTCCCCTTTTTGATTA
GCTTACCGGACGGCGCCAGC

Downstream 100 bases:

>100_bases
GGCGGCTATGAAATCTGTTTTTCGTCTACTTCCTTTCCTCTTTCTGCTGGGGCTGAGCGCCTATCTTCCCGGCGTGCGGG
CTGAAACCTGCCGCGCAAAT

Product: putative export and assembly usher protein of type 1 fimbriae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 851; Mature: 851

Protein sequence:

>851_residues
MKRITTARVREYALLPVTAGRAVALATVPTMMFCLSPLSRAMADDYFDPAALEFADPQQQTSDLHYFAKPGGQQPGTYPV
TVVVNDQELGQADITFVDDGGQLRPVLTPGQLAEYGVNVSAFPAFQALHEGETFTRIEKFIPDASSRFSFANQRLTLSIP
QAAMNVQSRGYVDPSRWDDGVPAAFVDYYFSGAQIKNADEGESSRSNYLNLRSGLNLGAWRLRNISSMQYDQQRRHWDTQ
STWLQRDVRSLKSLLRIGDTYTTGDVFDSIQFRGVQLMSDDEMLPDSQRGFAPTIRGVAHSNAKVTVSQHGYVIYETFVS
PGAFAISDLYPTSQSGDLEVKVTESNGAVRTFTQPYSAVPYMLREGRGKFSLSAGRYHSGGESVRSPEFLQGTLFYGLTA
GFTLYGGTQLARDYQAWALGLGRGFGEFGSLGGDVTQAVTRTPSGKRYTGHSLRAQYQKNFVSSGTAFSLASYRYSSSGY
YDFAEASALESAQGQVDNRRRREELSVSQSLGGLGSLAVSAWSQEYWHRQSRDETVHLGFYSAWKGISWGVGYYYTRASG
QQKNDRSWSFNINIPLGGPLSDSAVSYNTTSDSNGYTSQQMSLYGAVPTRPNLFYSVQQGYGNQGRGSNSSASLDYHGGF
GNAQIGYRHDAASNQLTWGGAGSVVAHPHGVTFGQTVGESFAIVRAPGAAGVAVQNGNNVHTDWRGYAVVPSLTAYRKNV
ITLDTESMADDTDVDQQGQTVIPGGGAVVMANYQTHIGNRVLFTLRNAQGPLPFGASARLVEEEESGNPSGGMVADGGQV
YLSGVPQEGTLAVSWIVNNQSQSCTLHFHLPDNPQQSLNTVKTVSGLCQTR

Sequences:

>Translated_851_residues
MKRITTARVREYALLPVTAGRAVALATVPTMMFCLSPLSRAMADDYFDPAALEFADPQQQTSDLHYFAKPGGQQPGTYPV
TVVVNDQELGQADITFVDDGGQLRPVLTPGQLAEYGVNVSAFPAFQALHEGETFTRIEKFIPDASSRFSFANQRLTLSIP
QAAMNVQSRGYVDPSRWDDGVPAAFVDYYFSGAQIKNADEGESSRSNYLNLRSGLNLGAWRLRNISSMQYDQQRRHWDTQ
STWLQRDVRSLKSLLRIGDTYTTGDVFDSIQFRGVQLMSDDEMLPDSQRGFAPTIRGVAHSNAKVTVSQHGYVIYETFVS
PGAFAISDLYPTSQSGDLEVKVTESNGAVRTFTQPYSAVPYMLREGRGKFSLSAGRYHSGGESVRSPEFLQGTLFYGLTA
GFTLYGGTQLARDYQAWALGLGRGFGEFGSLGGDVTQAVTRTPSGKRYTGHSLRAQYQKNFVSSGTAFSLASYRYSSSGY
YDFAEASALESAQGQVDNRRRREELSVSQSLGGLGSLAVSAWSQEYWHRQSRDETVHLGFYSAWKGISWGVGYYYTRASG
QQKNDRSWSFNINIPLGGPLSDSAVSYNTTSDSNGYTSQQMSLYGAVPTRPNLFYSVQQGYGNQGRGSNSSASLDYHGGF
GNAQIGYRHDAASNQLTWGGAGSVVAHPHGVTFGQTVGESFAIVRAPGAAGVAVQNGNNVHTDWRGYAVVPSLTAYRKNV
ITLDTESMADDTDVDQQGQTVIPGGGAVVMANYQTHIGNRVLFTLRNAQGPLPFGASARLVEEEESGNPSGGMVADGGQV
YLSGVPQEGTLAVSWIVNNQSQSCTLHFHLPDNPQQSLNTVKTVSGLCQTR
>Mature_851_residues
MKRITTARVREYALLPVTAGRAVALATVPTMMFCLSPLSRAMADDYFDPAALEFADPQQQTSDLHYFAKPGGQQPGTYPV
TVVVNDQELGQADITFVDDGGQLRPVLTPGQLAEYGVNVSAFPAFQALHEGETFTRIEKFIPDASSRFSFANQRLTLSIP
QAAMNVQSRGYVDPSRWDDGVPAAFVDYYFSGAQIKNADEGESSRSNYLNLRSGLNLGAWRLRNISSMQYDQQRRHWDTQ
STWLQRDVRSLKSLLRIGDTYTTGDVFDSIQFRGVQLMSDDEMLPDSQRGFAPTIRGVAHSNAKVTVSQHGYVIYETFVS
PGAFAISDLYPTSQSGDLEVKVTESNGAVRTFTQPYSAVPYMLREGRGKFSLSAGRYHSGGESVRSPEFLQGTLFYGLTA
GFTLYGGTQLARDYQAWALGLGRGFGEFGSLGGDVTQAVTRTPSGKRYTGHSLRAQYQKNFVSSGTAFSLASYRYSSSGY
YDFAEASALESAQGQVDNRRRREELSVSQSLGGLGSLAVSAWSQEYWHRQSRDETVHLGFYSAWKGISWGVGYYYTRASG
QQKNDRSWSFNINIPLGGPLSDSAVSYNTTSDSNGYTSQQMSLYGAVPTRPNLFYSVQQGYGNQGRGSNSSASLDYHGGF
GNAQIGYRHDAASNQLTWGGAGSVVAHPHGVTFGQTVGESFAIVRAPGAAGVAVQNGNNVHTDWRGYAVVPSLTAYRKNV
ITLDTESMADDTDVDQQGQTVIPGGGAVVMANYQTHIGNRVLFTLRNAQGPLPFGASARLVEEEESGNPSGGMVADGGQV
YLSGVPQEGTLAVSWIVNNQSQSCTLHFHLPDNPQQSLNTVKTVSGLCQTR

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=853, Percent_Identity=40.4454865181712, Blast_Score=611, Evalue=1e-176,
Organism=Escherichia coli, GI1789533, Length=826, Percent_Identity=40.1937046004843, Blast_Score=575, Evalue=1e-165,
Organism=Escherichia coli, GI1787172, Length=854, Percent_Identity=38.1733021077283, Blast_Score=572, Evalue=1e-164,
Organism=Escherichia coli, GI1786744, Length=866, Percent_Identity=37.4133949191686, Blast_Score=551, Evalue=1e-158,
Organism=Escherichia coli, GI1786332, Length=876, Percent_Identity=30.4794520547945, Blast_Score=358, Evalue=1e-100,
Organism=Escherichia coli, GI1788427, Length=844, Percent_Identity=29.0284360189574, Blast_Score=318, Evalue=1e-87,
Organism=Escherichia coli, GI87081778, Length=857, Percent_Identity=26.8378063010502, Blast_Score=249, Evalue=5e-67,
Organism=Escherichia coli, GI1789610, Length=848, Percent_Identity=23.3490566037736, Blast_Score=142, Evalue=6e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 92523; Mature: 92523

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRITTARVREYALLPVTAGRAVALATVPTMMFCLSPLSRAMADDYFDPAALEFADPQQQ
CCCCCHHHHHEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHH
TSDLHYFAKPGGQQPGTYPVTVVVNDQELGQADITFVDDGGQLRPVLTPGQLAEYGVNVS
CCCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCHHHHHCCCCC
AFPAFQALHEGETFTRIEKFIPDASSRFSFANQRLTLSIPQAAMNVQSRGYVDPSRWDDG
HHHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCEEEEECCHHHHCCCCCCCCCHHCCCCC
VPAAFVDYYFSGAQIKNADEGESSRSNYLNLRSGLNLGAWRLRNISSMQYDQQRRHWDTQ
CCHHHHHHHCCCCEECCCCCCCCCCCCEEEHHCCCCCCHHHHCCCCHHHHHHHHHCCCHH
STWLQRDVRSLKSLLRIGDTYTTGDVFDSIQFRGVQLMSDDEMLPDSQRGFAPTIRGVAH
HHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHCCCEEEECCCCCCCCCCCCCCCHHHHHCC
SNAKVTVSQHGYVIYETFVSPGAFAISDLYPTSQSGDLEVKVTESNGAVRTFTQPYSAVP
CCCEEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCHHHH
YMLREGRGKFSLSAGRYHSGGESVRSPEFLQGTLFYGLTAGFTLYGGTQLARDYQAWALG
HHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHEEEEHHHCCEEEECCHHHHHHHHHHHHH
LGRGFGEFGSLGGDVTQAVTRTPSGKRYTGHSLRAQYQKNFVSSGTAFSLASYRYSSSGY
HCCCCHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
YDFAEASALESAQGQVDNRRRREELSVSQSLGGLGSLAVSAWSQEYWHRQSRDETVHLGF
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
YSAWKGISWGVGYYYTRASGQQKNDRSWSFNINIPLGGPLSDSAVSYNTTSDSNGYTSQQ
HHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCE
MSLYGAVPTRPNLFYSVQQGYGNQGRGSNSSASLDYHGGFGNAQIGYRHDAASNQLTWGG
EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCEEECC
AGSVVAHPHGVTFGQTVGESFAIVRAPGAAGVAVQNGNNVHTDWRGYAVVPSLTAYRKNV
CCCEEECCCCCCHHHHCCCCEEEEECCCCCEEEEECCCEECCCCCCEEECCCHHHHCCCE
ITLDTESMADDTDVDQQGQTVIPGGGAVVMANYQTHIGNRVLFTLRNAQGPLPFGASARL
EEEECCCCCCCCCCCCCCCEEECCCCEEEEEECHHCCCCEEEEEEECCCCCCCCCCCCEE
VEEEESGNPSGGMVADGGQVYLSGVPQEGTLAVSWIVNNQSQSCTLHFHLPDNPQQSLNT
EECCCCCCCCCCEEECCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHH
VKTVSGLCQTR
HHHHHHHHCCC
>Mature Secondary Structure
MKRITTARVREYALLPVTAGRAVALATVPTMMFCLSPLSRAMADDYFDPAALEFADPQQQ
CCCCCHHHHHEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHH
TSDLHYFAKPGGQQPGTYPVTVVVNDQELGQADITFVDDGGQLRPVLTPGQLAEYGVNVS
CCCCEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCHHHHHCCCCC
AFPAFQALHEGETFTRIEKFIPDASSRFSFANQRLTLSIPQAAMNVQSRGYVDPSRWDDG
HHHHHHHHHCCCHHHHHHHHCCCCCHHHHHCCCEEEEECCHHHHCCCCCCCCCHHCCCCC
VPAAFVDYYFSGAQIKNADEGESSRSNYLNLRSGLNLGAWRLRNISSMQYDQQRRHWDTQ
CCHHHHHHHCCCCEECCCCCCCCCCCCEEEHHCCCCCCHHHHCCCCHHHHHHHHHCCCHH
STWLQRDVRSLKSLLRIGDTYTTGDVFDSIQFRGVQLMSDDEMLPDSQRGFAPTIRGVAH
HHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHCCCEEEECCCCCCCCCCCCCCCHHHHHCC
SNAKVTVSQHGYVIYETFVSPGAFAISDLYPTSQSGDLEVKVTESNGAVRTFTQPYSAVP
CCCEEEEECCCEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEECCCCHHHH
YMLREGRGKFSLSAGRYHSGGESVRSPEFLQGTLFYGLTAGFTLYGGTQLARDYQAWALG
HHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHEEEEHHHCCEEEECCHHHHHHHHHHHHH
LGRGFGEFGSLGGDVTQAVTRTPSGKRYTGHSLRAQYQKNFVSSGTAFSLASYRYSSSGY
HCCCCHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCC
YDFAEASALESAQGQVDNRRRREELSVSQSLGGLGSLAVSAWSQEYWHRQSRDETVHLGF
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEE
YSAWKGISWGVGYYYTRASGQQKNDRSWSFNINIPLGGPLSDSAVSYNTTSDSNGYTSQQ
HHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCEEECCCCCCCCCCCCE
MSLYGAVPTRPNLFYSVQQGYGNQGRGSNSSASLDYHGGFGNAQIGYRHDAASNQLTWGG
EEEEECCCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCEEECC
AGSVVAHPHGVTFGQTVGESFAIVRAPGAAGVAVQNGNNVHTDWRGYAVVPSLTAYRKNV
CCCEEECCCCCCHHHHCCCCEEEEECCCCCEEEEECCCEECCCCCCEEECCCHHHHCCCE
ITLDTESMADDTDVDQQGQTVIPGGGAVVMANYQTHIGNRVLFTLRNAQGPLPFGASARL
EEEECCCCCCCCCCCCCCCEEECCCCEEEEEECHHCCCCEEEEEEECCCCCCCCCCCCEE
VEEEESGNPSGGMVADGGQVYLSGVPQEGTLAVSWIVNNQSQSCTLHFHLPDNPQQSLNT
EECCCCCCCCCCEEECCCEEEEECCCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHH
VKTVSGLCQTR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]