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The map label for this gene is fimD [H]

Identifier: 238894711

GI number: 238894711

Start: 2594860

End: 2597361

Strand: Reverse

Name: fimD [H]

Synonym: KP1_2717

Alternate gene names: 238894711

Gene position: 2597361-2594860 (Counterclockwise)

Preceding gene: 238894712

Following gene: 238894710

Centisome position: 49.49

GC content: 61.63

Gene sequence:

>2502_bases
ATGCGCCACGGCCCGGCTCATACCGTTACCATCGTCAGCCTCTCCATCCTGCTGGGCGGACAGAGCGCGCTCTTGCACGC
CCAGGCGACCTTTAATATGGATCTGCTGGAGAAAAACGACCATTTGCCGGCAGTGGATCTGCAACGCTTCAATCAGCAGG
CGGGCCAGCCGCCAGGCGACTATCCGGTGAGCTGGCAGGTCAACGGCGTCACGCTGGACGCCCGTAAGACCGTCACGTTT
CGCCAGAACGATCGCGGACAGCTCACGCCCTGCCTTAAGCCGGAAGATCTGCTGCAGGCCGGAGTTAACCCGGCCGTGCT
GTCCCAGGCGCCCGGCGCAACGTCCCGCTCATGTCCCGAACTCAACGCGCTGCTGCCGGGCAGCACGGTCAATTTCGATT
TTGCTCATCAGCGGCTGGTAATGACCATTCCTCAGGCGCTGATGACGCACCGGGCGAGGGATAATGTTCCCTCTGCGCTG
TGGGACGAAGGTATTAGCGCCTTTCAGAGTAACTATCGTTATTCAGGCGCCAGCCAGCGTACCCGCGAGGGCAGCACCGA
GCGCGATAACTATCTGATGTTGAAAAGCGGCGTGAACGTCGGCGCCTGGCGCCTGCGCGCCAGCAATAGCCTGACCGCCA
ACAGCGATGATAAGCCCCAGTGGACGACCAGCGGCGCCTGGCTTGAGCGCGACCTGACGCGCTGGCAGAGTGAACTGACC
CTCGGGGATACCTTCACGTCGGGCGATGTGTTTGACGCGGTACAGTTTCAGGGAATATCCCTCGCCTCCAGCGATGCGAT
GCTCCCGGACTCGCAGAAAGGTTTTGCCCCGACCATCCGCGGGATTGCCAGAACCAACGCCCAGGTCACGGTTCGGCAAA
ATGGCTACGTGCTGTATCAAACCTACGTCACCCCCGGCGCGTTCGTGATTGACGATCTTTATCCCACCGCCAGCAGCGGC
AATCTTGAGGTTGCCGTCAAAGAGTCGGATGGCGAAATCCGCCGCTTCACCCAGCCGTATGCTTCGGTGACCAGCATGCA
GCGCGAAGGCAGCCTGAAATACAACCTGGTCGCCGGGCGCTACCATAGCGACGATACCAGCCAGCGGCCGTTGATGATGC
AGCTGTCGCTGATGCGCGGGTTCGCCCACAATCTGACGCTGTTTGGCGGACTGCAGAGCGCGGCGCAATACCATAACCTC
TCGCTCGGCGCAGGACAGGGGTTGGGAGAAGCCGGGGCGCTCTCGCTGCAGCTGTTAAACGCCCGCGACCGGCACCAGCA
GGATCCGATCGATGGCCGGGCCTGGCAGCTCCAGTACAGCAAAGGTTTTGATCGTCTTGGCACGCAGTTCACTTTCACCG
GCTGGCGTTATTCGCATCAGCGCTATGCCACGCTGAGCGAGGCGTTTTCCAGCCCGGGTAGCGACGACGACCTGCAGGAT
AGCGACAACAAAAAAGCAACCCTGCAAATCACCGCCAGCCAGAGCCTGCCGTACGATATCACCCTCTATCTGAGCCTCGA
CCAGGACAGCTACTGGTCAGGGGGCGCCACACAGCGTACCGCCAATATGGGGATCAGCAGCCAGGTTCACGGTATCGCGT
GGTCGCTCAGCTACAGCGACTCCCGCAGCAGCCACGGTGACGAGGAGGATGACGAGCCGCATTCCGACAAAGTGGTGACG
TTGTCACTTTCCGTGCCGTTGAGCCACCTGCTGCCGGGGAGCTATGCCGGCTATACCCTGACCTCCTCCCGCCACAGCGT
TGGCAGTCAGATGGTCAGCCTCAACGGCACATTGCTGGACAATCACGCGCTTAGCTACGCCGTCAGCCAAACCCGCGATC
GGCAAAACGGGTCCAGCGGCAGCCTGACGGCCGGGTACAGCAGTGGAAGGGGCGATCTGAATCTCGGCTACAGCCACGAT
TCGCAGGCCGCTCGTCTGAACTACGGCGCCAGCGGGGGCATTCTGATTCACCGCCACGGGGTAGTCTTTACGCCGGAAAT
GAATGGCGCTGTCGTCCTGATTGACGCCGGTGGCGCCGGCGGTGTGACCCTCGCCAACCAGAAAACCATCGCCACCAATG
GTGACGGGTACGCCGTGCTGCCCTTCGCCACCGCCTATCACCGCAACGACGTCTCTCTCGACAGCCATTCGCTGCCGGAG
AATGTGGATCTGGCCAACAGCACCGTGACGCTGGTCCCTACCAAAGACGCGGTGGTTCTGGCGCGCTTTCACACCCACGT
TGGCTATAAGGCGCTGTTTACGCTGCAGTCGCGGGGACAACCGCTGCCCTTTGGCAGCGAAGTACGCGCTAAGGACACCA
ACAGCATCGTTGCCAGCGAGGGTCAGGTGTACCTGGCCGGCCTGGCGCCAAAAGGCACCCTGTATGCGCAATGGGGGCCA
GGCCCTCAGCAGCGCTGTAGCGCCCGCTACGATCTCACCCCGACGCTGGCGCAGACCCCCCATCCACTCATCTTACAGCA
GACGTTATCATGTCCTTTTTAA

Upstream 100 bases:

>100_bases
GGCCTGCGACCGCGAGGTGAGCTGGCGCATTCTGGATGACTTTGGCGCTGTGCAGACGTTTAGCGCCCCCGTTTCGGCGC
ACTAAGCGTCTGATGTCGCG

Downstream 100 bases:

>100_bases
CTCTCCTGCGTCGGGTCGCCCTGACGCTGTTATTCACTCTGTTACCGGCCGCCAGCGGATGGGCCTGTACGCCAGTGTTT
GTCCGCGGCCAGGCCTCCAC

Product: putative fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 833; Mature: 833

Protein sequence:

>833_residues
MRHGPAHTVTIVSLSILLGGQSALLHAQATFNMDLLEKNDHLPAVDLQRFNQQAGQPPGDYPVSWQVNGVTLDARKTVTF
RQNDRGQLTPCLKPEDLLQAGVNPAVLSQAPGATSRSCPELNALLPGSTVNFDFAHQRLVMTIPQALMTHRARDNVPSAL
WDEGISAFQSNYRYSGASQRTREGSTERDNYLMLKSGVNVGAWRLRASNSLTANSDDKPQWTTSGAWLERDLTRWQSELT
LGDTFTSGDVFDAVQFQGISLASSDAMLPDSQKGFAPTIRGIARTNAQVTVRQNGYVLYQTYVTPGAFVIDDLYPTASSG
NLEVAVKESDGEIRRFTQPYASVTSMQREGSLKYNLVAGRYHSDDTSQRPLMMQLSLMRGFAHNLTLFGGLQSAAQYHNL
SLGAGQGLGEAGALSLQLLNARDRHQQDPIDGRAWQLQYSKGFDRLGTQFTFTGWRYSHQRYATLSEAFSSPGSDDDLQD
SDNKKATLQITASQSLPYDITLYLSLDQDSYWSGGATQRTANMGISSQVHGIAWSLSYSDSRSSHGDEEDDEPHSDKVVT
LSLSVPLSHLLPGSYAGYTLTSSRHSVGSQMVSLNGTLLDNHALSYAVSQTRDRQNGSSGSLTAGYSSGRGDLNLGYSHD
SQAARLNYGASGGILIHRHGVVFTPEMNGAVVLIDAGGAGGVTLANQKTIATNGDGYAVLPFATAYHRNDVSLDSHSLPE
NVDLANSTVTLVPTKDAVVLARFHTHVGYKALFTLQSRGQPLPFGSEVRAKDTNSIVASEGQVYLAGLAPKGTLYAQWGP
GPQQRCSARYDLTPTLAQTPHPLILQQTLSCPF

Sequences:

>Translated_833_residues
MRHGPAHTVTIVSLSILLGGQSALLHAQATFNMDLLEKNDHLPAVDLQRFNQQAGQPPGDYPVSWQVNGVTLDARKTVTF
RQNDRGQLTPCLKPEDLLQAGVNPAVLSQAPGATSRSCPELNALLPGSTVNFDFAHQRLVMTIPQALMTHRARDNVPSAL
WDEGISAFQSNYRYSGASQRTREGSTERDNYLMLKSGVNVGAWRLRASNSLTANSDDKPQWTTSGAWLERDLTRWQSELT
LGDTFTSGDVFDAVQFQGISLASSDAMLPDSQKGFAPTIRGIARTNAQVTVRQNGYVLYQTYVTPGAFVIDDLYPTASSG
NLEVAVKESDGEIRRFTQPYASVTSMQREGSLKYNLVAGRYHSDDTSQRPLMMQLSLMRGFAHNLTLFGGLQSAAQYHNL
SLGAGQGLGEAGALSLQLLNARDRHQQDPIDGRAWQLQYSKGFDRLGTQFTFTGWRYSHQRYATLSEAFSSPGSDDDLQD
SDNKKATLQITASQSLPYDITLYLSLDQDSYWSGGATQRTANMGISSQVHGIAWSLSYSDSRSSHGDEEDDEPHSDKVVT
LSLSVPLSHLLPGSYAGYTLTSSRHSVGSQMVSLNGTLLDNHALSYAVSQTRDRQNGSSGSLTAGYSSGRGDLNLGYSHD
SQAARLNYGASGGILIHRHGVVFTPEMNGAVVLIDAGGAGGVTLANQKTIATNGDGYAVLPFATAYHRNDVSLDSHSLPE
NVDLANSTVTLVPTKDAVVLARFHTHVGYKALFTLQSRGQPLPFGSEVRAKDTNSIVASEGQVYLAGLAPKGTLYAQWGP
GPQQRCSARYDLTPTLAQTPHPLILQQTLSCPF
>Mature_833_residues
MRHGPAHTVTIVSLSILLGGQSALLHAQATFNMDLLEKNDHLPAVDLQRFNQQAGQPPGDYPVSWQVNGVTLDARKTVTF
RQNDRGQLTPCLKPEDLLQAGVNPAVLSQAPGATSRSCPELNALLPGSTVNFDFAHQRLVMTIPQALMTHRARDNVPSAL
WDEGISAFQSNYRYSGASQRTREGSTERDNYLMLKSGVNVGAWRLRASNSLTANSDDKPQWTTSGAWLERDLTRWQSELT
LGDTFTSGDVFDAVQFQGISLASSDAMLPDSQKGFAPTIRGIARTNAQVTVRQNGYVLYQTYVTPGAFVIDDLYPTASSG
NLEVAVKESDGEIRRFTQPYASVTSMQREGSLKYNLVAGRYHSDDTSQRPLMMQLSLMRGFAHNLTLFGGLQSAAQYHNL
SLGAGQGLGEAGALSLQLLNARDRHQQDPIDGRAWQLQYSKGFDRLGTQFTFTGWRYSHQRYATLSEAFSSPGSDDDLQD
SDNKKATLQITASQSLPYDITLYLSLDQDSYWSGGATQRTANMGISSQVHGIAWSLSYSDSRSSHGDEEDDEPHSDKVVT
LSLSVPLSHLLPGSYAGYTLTSSRHSVGSQMVSLNGTLLDNHALSYAVSQTRDRQNGSSGSLTAGYSSGRGDLNLGYSHD
SQAARLNYGASGGILIHRHGVVFTPEMNGAVVLIDAGGAGGVTLANQKTIATNGDGYAVLPFATAYHRNDVSLDSHSLPE
NVDLANSTVTLVPTKDAVVLARFHTHVGYKALFTLQSRGQPLPFGSEVRAKDTNSIVASEGQVYLAGLAPKGTLYAQWGP
GPQQRCSARYDLTPTLAQTPHPLILQQTLSCPF

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=869, Percent_Identity=36.3636363636364, Blast_Score=532, Evalue=1e-152,
Organism=Escherichia coli, GI1789533, Length=801, Percent_Identity=37.7028714107366, Blast_Score=518, Evalue=1e-148,
Organism=Escherichia coli, GI1786744, Length=847, Percent_Identity=36.4817001180638, Blast_Score=499, Evalue=1e-142,
Organism=Escherichia coli, GI1787172, Length=833, Percent_Identity=35.1740696278511, Blast_Score=475, Evalue=1e-135,
Organism=Escherichia coli, GI1786332, Length=851, Percent_Identity=28.9071680376028, Blast_Score=322, Evalue=5e-89,
Organism=Escherichia coli, GI1788427, Length=738, Percent_Identity=28.0487804878049, Blast_Score=281, Evalue=9e-77,
Organism=Escherichia coli, GI87081778, Length=822, Percent_Identity=28.2238442822384, Blast_Score=260, Evalue=3e-70,
Organism=Escherichia coli, GI1789610, Length=773, Percent_Identity=24.4501940491591, Blast_Score=129, Evalue=8e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 90234; Mature: 90234

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHGPAHTVTIVSLSILLGGQSALLHAQATFNMDLLEKNDHLPAVDLQRFNQQAGQPPGD
CCCCCCCEEEEEEEEEEECCCCEEEEEEEECCEEEECCCCCCCCHHHHHHHHHHCCCCCC
YPVSWQVNGVTLDARKTVTFRQNDRGQLTPCLKPEDLLQAGVNPAVLSQAPGATSRSCPE
CCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCC
LNALLPGSTVNFDFAHQRLVMTIPQALMTHRARDNVPSALWDEGISAFQSNYRYSGASQR
CCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCH
TREGSTERDNYLMLKSGVNVGAWRLRASNSLTANSDDKPQWTTSGAWLERDLTRWQSELT
HCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHHHEE
LGDTFTSGDVFDAVQFQGISLASSDAMLPDSQKGFAPTIRGIARTNAQVTVRQNGYVLYQ
ECCCCCCCCCCHHHEECCEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCEEEEE
TYVTPGAFVIDDLYPTASSGNLEVAVKESDGEIRRFTQPYASVTSMQREGSLKYNLVAGR
EEECCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEE
YHSDDTSQRPLMMQLSLMRGFAHNLTLFGGLQSAAQYHNLSLGAGQGLGEAGALSLQLLN
ECCCCCCCCCHHHHHHHHHHHHHCEEEECCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC
ARDRHQQDPIDGRAWQLQYSKGFDRLGTQFTFTGWRYSHQRYATLSEAFSSPGSDDDLQD
CCHHCCCCCCCCCEEEEEECCCHHHCCCEEEEECEEECCHHHHHHHHHHCCCCCCCCCCC
SDNKKATLQITASQSLPYDITLYLSLDQDSYWSGGATQRTANMGISSQVHGIAWSLSYSD
CCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEECCCCCCCCCCEEEEEEECCC
SRSSHGDEEDDEPHSDKVVTLSLSVPLSHLLPGSYAGYTLTSSRHSVGSQMVSLNGTLLD
CCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCEEEECCCHHHCCEEEEECCEEEE
NHALSYAVSQTRDRQNGSSGSLTAGYSSGRGDLNLGYSHDSQAARLNYGASGGILIHRHG
CCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEECCCCCCCCEEEECCCCCCEEEEECC
VVFTPEMNGAVVLIDAGGAGGVTLANQKTIATNGDGYAVLPFATAYHRNDVSLDSHSLPE
EEECCCCCCEEEEEECCCCCCEEEECCEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCC
NVDLANSTVTLVPTKDAVVLARFHTHVGYKALFTLQSRGQPLPFGSEVRAKDTNSIVASE
CCCCCCCEEEEEECCCEEEEEEHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC
GQVYLAGLAPKGTLYAQWGPGPQQRCSARYDLTPTLAQTPHPLILQQTLSCPF
CCEEEEEECCCCEEEEECCCCHHHHCCCCCCCCCHHHCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MRHGPAHTVTIVSLSILLGGQSALLHAQATFNMDLLEKNDHLPAVDLQRFNQQAGQPPGD
CCCCCCCEEEEEEEEEEECCCCEEEEEEEECCEEEECCCCCCCCHHHHHHHHHHCCCCCC
YPVSWQVNGVTLDARKTVTFRQNDRGQLTPCLKPEDLLQAGVNPAVLSQAPGATSRSCPE
CCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCC
LNALLPGSTVNFDFAHQRLVMTIPQALMTHRARDNVPSALWDEGISAFQSNYRYSGASQR
CCEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCH
TREGSTERDNYLMLKSGVNVGAWRLRASNSLTANSDDKPQWTTSGAWLERDLTRWQSELT
HCCCCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHHHHHHHHHEE
LGDTFTSGDVFDAVQFQGISLASSDAMLPDSQKGFAPTIRGIARTNAQVTVRQNGYVLYQ
ECCCCCCCCCCHHHEECCEEEECCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCEEEEE
TYVTPGAFVIDDLYPTASSGNLEVAVKESDGEIRRFTQPYASVTSMQREGSLKYNLVAGR
EEECCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEE
YHSDDTSQRPLMMQLSLMRGFAHNLTLFGGLQSAAQYHNLSLGAGQGLGEAGALSLQLLN
ECCCCCCCCCHHHHHHHHHHHHHCEEEECCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC
ARDRHQQDPIDGRAWQLQYSKGFDRLGTQFTFTGWRYSHQRYATLSEAFSSPGSDDDLQD
CCHHCCCCCCCCCEEEEEECCCHHHCCCEEEEECEEECCHHHHHHHHHHCCCCCCCCCCC
SDNKKATLQITASQSLPYDITLYLSLDQDSYWSGGATQRTANMGISSQVHGIAWSLSYSD
CCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEECCCCCCCCCCEEEEEEECCC
SRSSHGDEEDDEPHSDKVVTLSLSVPLSHLLPGSYAGYTLTSSRHSVGSQMVSLNGTLLD
CCCCCCCCCCCCCCCCCEEEEEECCCHHHHCCCCCCCEEEECCCHHHCCEEEEECCEEEE
NHALSYAVSQTRDRQNGSSGSLTAGYSSGRGDLNLGYSHDSQAARLNYGASGGILIHRHG
CCHHHHHHHHHHCCCCCCCCCEEECCCCCCCCEEECCCCCCCCEEEECCCCCCEEEEECC
VVFTPEMNGAVVLIDAGGAGGVTLANQKTIATNGDGYAVLPFATAYHRNDVSLDSHSLPE
EEECCCCCCEEEEEECCCCCCEEEECCEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCC
NVDLANSTVTLVPTKDAVVLARFHTHVGYKALFTLQSRGQPLPFGSEVRAKDTNSIVASE
CCCCCCCEEEEEECCCEEEEEEHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEECC
GQVYLAGLAPKGTLYAQWGPGPQQRCSARYDLTPTLAQTPHPLILQQTLSCPF
CCEEEEEECCCCEEEEECCCCHHHHCCCCCCCCCHHHCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]