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The map label for this gene is yddE [C]

Identifier: 238894659

GI number: 238894659

Start: 2548810

End: 2549604

Strand: Direct

Name: yddE [C]

Synonym: KP1_2664

Alternate gene names: 238894659

Gene position: 2548810-2549604 (Clockwise)

Preceding gene: 238894657

Following gene: 238894664

Centisome position: 48.56

GC content: 60.13

Gene sequence:

>795_bases
ATGCAGGAAATTCAATTTTATCTGGTCGATGCTTTCAGCGATAAAAACTTTGGCGGCAATGCCGCGGCCGTCTGCCCGCT
CAGCGAGTGGTTAGCCGACGATGTGCTCCTGAAAATGGCCCAGCAGCATAATCAATCCGAAACGGCTTTCTTTGTCCGTA
CCGACGAGGGCTATGAGCTGCGCTGGTTTACCACACTCGCTGAGATCAATCTCTGCGGCCACGCGACCCTCGCCGCTGCG
CACGTTATTTTCGAATATCTCGACCATCCTTCGGCGACGATTCTCTTTAGCACCCGTTTTGTTGGTGAGCTGCGGGTCAC
CCGTAATGGCGACTGGCTGACGCTCGATTTCCCGGCGTGGTCGACCTCCCCGGTGGAAAACCCGCCGGCGGATCTGCTGA
CCGGGTTGGGACTCGAGGCCGCCGTTGAAGTTCGGGAAGGACGCGATTATCTGGTGGTGCTGGCGGATCGCCAGCAGGTT
GAAGCGGTGCGACCGGATATGGCGCGGCTGCGAACGCTTGGCAAAATGATCTGCGCCAGCGCGCCGGATGAAGAGTATGA
CTTTGTCAGCCGCTTCTTCTGCCCGGGAGAAGGGGTGCCGGAAGATCCGGTCACCGGCTCCGCCCATAGCATGCTGATCC
CCTGGTGGGGCGAAAAGCTGGGGAAAACCACCATGATGGCGCGCCAGGTCTCCGCTCGCGGCGGCGACCTGCGCTGCCAG
TGGCAGGGCGACCGTGTGCTGATTAGCGGCCAGGCCACCACCTATATGCGCGGAACGGTTTACCTGCGAGGTTAA

Upstream 100 bases:

>100_bases
AGGGGCTGGCCGCGGTTAAGCGATTAATTTTGCTATGGATAGTGTCAAGGGGGCGCTTTTATGTCATGTTGAAGGAAAGT
AAAAAAAGTAAGGACAGGGT

Downstream 100 bases:

>100_bases
CAATGTGTTTACGCCCGGTGGCGTCCTCTACCGGGCGGATTGGACTTAATGTTGTTCTGCGGCATTAAGGACGGGTGATT
TTCCACCTTTGTCATTGATA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQEIQFYLVDAFSDKNFGGNAAAVCPLSEWLADDVLLKMAQQHNQSETAFFVRTDEGYELRWFTTLAEINLCGHATLAAA
HVIFEYLDHPSATILFSTRFVGELRVTRNGDWLTLDFPAWSTSPVENPPADLLTGLGLEAAVEVREGRDYLVVLADRQQV
EAVRPDMARLRTLGKMICASAPDEEYDFVSRFFCPGEGVPEDPVTGSAHSMLIPWWGEKLGKTTMMARQVSARGGDLRCQ
WQGDRVLISGQATTYMRGTVYLRG

Sequences:

>Translated_264_residues
MQEIQFYLVDAFSDKNFGGNAAAVCPLSEWLADDVLLKMAQQHNQSETAFFVRTDEGYELRWFTTLAEINLCGHATLAAA
HVIFEYLDHPSATILFSTRFVGELRVTRNGDWLTLDFPAWSTSPVENPPADLLTGLGLEAAVEVREGRDYLVVLADRQQV
EAVRPDMARLRTLGKMICASAPDEEYDFVSRFFCPGEGVPEDPVTGSAHSMLIPWWGEKLGKTTMMARQVSARGGDLRCQ
WQGDRVLISGQATTYMRGTVYLRG
>Mature_264_residues
MQEIQFYLVDAFSDKNFGGNAAAVCPLSEWLADDVLLKMAQQHNQSETAFFVRTDEGYELRWFTTLAEINLCGHATLAAA
HVIFEYLDHPSATILFSTRFVGELRVTRNGDWLTLDFPAWSTSPVENPPADLLTGLGLEAAVEVREGRDYLVVLADRQQV
EAVRPDMARLRTLGKMICASAPDEEYDFVSRFFCPGEGVPEDPVTGSAHSMLIPWWGEKLGKTTMMARQVSARGGDLRCQ
WQGDRVLISGQATTYMRGTVYLRG

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=286, Percent_Identity=36.3636363636364, Blast_Score=148, Evalue=6e-36,
Organism=Homo sapiens, GI74316009, Length=253, Percent_Identity=35.9683794466403, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1787737, Length=297, Percent_Identity=27.9461279461279, Blast_Score=87, Evalue=9e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=310, Percent_Identity=33.2258064516129, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17542154, Length=310, Percent_Identity=33.2258064516129, Blast_Score=149, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17542158, Length=309, Percent_Identity=32.6860841423948, Blast_Score=140, Evalue=5e-34,
Organism=Caenorhabditis elegans, GI17542152, Length=309, Percent_Identity=32.6860841423948, Blast_Score=140, Evalue=5e-34,
Organism=Saccharomyces cerevisiae, GI6321818, Length=291, Percent_Identity=26.4604810996564, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 29449; Mature: 29449

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEIQFYLVDAFSDKNFGGNAAAVCPLSEWLADDVLLKMAQQHNQSETAFFVRTDEGYEL
CCCEEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEE
RWFTTLAEINLCGHATLAAAHVIFEYLDHPSATILFSTRFVGELRVTRNGDWLTLDFPAW
EEEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCEEEEECCCC
STSPVENPPADLLTGLGLEAAVEVREGRDYLVVLADRQQVEAVRPDMARLRTLGKMICAS
CCCCCCCCCHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHCHHHHHHHHHHHHHHCC
APDEEYDFVSRFFCPGEGVPEDPVTGSAHSMLIPWWGEKLGKTTMMARQVSARGGDLRCQ
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECHHHHHCHHHHHHHHHHCCCCCEEEE
WQGDRVLISGQATTYMRGTVYLRG
EECCEEEEECCCEEEEEEEEEEEC
>Mature Secondary Structure
MQEIQFYLVDAFSDKNFGGNAAAVCPLSEWLADDVLLKMAQQHNQSETAFFVRTDEGYEL
CCCEEEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEE
RWFTTLAEINLCGHATLAAAHVIFEYLDHPSATILFSTRFVGELRVTRNGDWLTLDFPAW
EEEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCEEEEECCCC
STSPVENPPADLLTGLGLEAAVEVREGRDYLVVLADRQQVEAVRPDMARLRTLGKMICAS
CCCCCCCCCHHHHHCCCCCEEEEEECCCCEEEEEECCHHHHHHCHHHHHHHHHHHHHHCC
APDEEYDFVSRFFCPGEGVPEDPVTGSAHSMLIPWWGEKLGKTTMMARQVSARGGDLRCQ
CCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECHHHHHCHHHHHHHHHHCCCCCEEEE
WQGDRVLISGQATTYMRGTVYLRG
EECCEEEEECCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]