Click here to switch to the map view.

The map label for this gene is yccA [H]

Identifier: 238894027

GI number: 238894027

Start: 1924074

End: 1924733

Strand: Reverse

Name: yccA [H]

Synonym: KP1_1973

Alternate gene names: 238894027

Gene position: 1924733-1924074 (Counterclockwise)

Preceding gene: 238894032

Following gene: 238894026

Centisome position: 36.67

GC content: 57.58

Gene sequence:

>660_bases
ATGGATCGCATAATTACATCATCGCGTGACCGTTCCTCGCTGCTCAGCACGCACAAGGTTCTGCGTAACACCTACTTCCT
GCTCAGCCTGACGCTGGCGTTTTCCGCTATCACCGCCACCGCCAGCACAGTGCTGATGCTCCCTTCGCCGGGTCTCATTT
TGACCCTCGTGGGGATGTACGGTCTGATGTTCCTGACCTACAAAACGGCGAATAAACCCACCGGGATTATTTCCGCCTTC
GCCTTCACCGGGTTCCTCGGCTATATCCTTGGGCCGATGCTGAACGCGTATCTTTCTGCCGGCATGGGCGATTTAATCGG
CCTGGCGCTGGGCGGCACGGCGCTGGTCTTCTTCTGCTGCTCGGCCTATGTGCTGACGACGCGTAAAGACATGTCATTCC
TTGGCGGGATGCTGATGGCCGGCGTGGTGGTCGTCCTGATTGGTATGGTCGCTAACCTGTTCCTGCAGCTGCCGGCGCTG
CACCTGGCGATTAGCGCGGTGTTCATCCTGATCTCTTCGGGTGCCATCCTGTTCGAGACCAGCAACATTATCCGCGGCGG
TGAAACCAACTATATCCGTGCGACGGTCAGTCTGTATGTCTCGCTGTACAACATCTTTGTCAGCCTGCTGAGCATCCTGG
GCTTCGCCAGCCGGGACTAA

Upstream 100 bases:

>100_bases
AGCGGTAAAAACTAAGTAAAGATGGGTAAAAGCATTAGGGCTTCACGCTTGTTTTTCTTATTCTTTATCCCTAATTACAT
CTGTCATAAGAGAGTGACTC

Downstream 100 bases:

>100_bases
CCGCTCCCCTGCTTAACAGAGGCCTCGCTTATGCGGGGCCTTTTTTTTTGCTACACTGCGGCCAGTTTCAGGCGGTATGT
GAAAAATCATGTTTATTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAF
AFTGFLGYILGPMLNAYLSAGMGDLIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGVVVVLIGMVANLFLQLPAL
HLAISAVFILISSGAILFETSNIIRGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD

Sequences:

>Translated_219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAF
AFTGFLGYILGPMLNAYLSAGMGDLIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGVVVVLIGMVANLFLQLPAL
HLAISAVFILISSGAILFETSNIIRGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
>Mature_219_residues
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAF
AFTGFLGYILGPMLNAYLSAGMGDLIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGVVVVLIGMVANLFLQLPAL
HLAISAVFILISSGAILFETSNIIRGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD

Specific function: Unknown

COG id: COG0670

COG function: function code R; Integral membrane protein, interacts with FtsH

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BI1 family [H]

Homologues:

Organism=Escherichia coli, GI1787205, Length=219, Percent_Identity=94.5205479452055, Blast_Score=409, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006213
- InterPro:   IPR006214 [H]

Pfam domain/function: PF01027 UPF0005 [H]

EC number: NA

Molecular weight: Translated: 23371; Mature: 23371

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS01243 BI1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
GLMFLTYKTANKPTGIISAFAFTGFLGYILGPMLNAYLSAGMGDLIGLALGGTALVFFCC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SAYVLTTRKDMSFLGGMLMAGVVVVLIGMVANLFLQLPALHLAISAVFILISSGAILFET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
SNIIRGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLAFSAITATASTVLMLPSPGLILTLVGMY
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHH
GLMFLTYKTANKPTGIISAFAFTGFLGYILGPMLNAYLSAGMGDLIGLALGGTALVFFCC
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SAYVLTTRKDMSFLGGMLMAGVVVVLIGMVANLFLQLPALHLAISAVFILISSGAILFET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
SNIIRGGETNYIRATVSLYVSLYNIFVSLLSILGFASRD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]