Click here to switch to the map view.

The map label for this gene is yccK [H]

Identifier: 238894026

GI number: 238894026

Start: 1923656

End: 1923985

Strand: Reverse

Name: yccK [H]

Synonym: KP1_1972

Alternate gene names: 238894026

Gene position: 1923985-1923656 (Counterclockwise)

Preceding gene: 238894027

Following gene: 238894022

Centisome position: 36.66

GC content: 52.42

Gene sequence:

>330_bases
ATGTTTATTTTTGAAGGCAACGAAATTGAAACGGATAGCGAAGGCTATCTGAAAGATACCACCCAGTGGAGCGAGGCGAT
GGCGGAAGTCATTGCCGCGCAGGAAGGGATAACGCTCGCCGTTGAACACTGGGAAGTAGTGCGCTTTGTGCGCGAGTTTT
ACCTTGAATTTAACACCTCTCCGGCGATCCGTATGCTGGTCAAGGCGATGGCCAACAAGTTTGGCGAAGAGAAAGGCAAC
AGCCGCTATCTCTATCGCCTGTTCCCGAAAGGACCCGCCAAACAGGCGACTAAAATCGCCGGCTTGCCGAAGCCGGTGAA
GTGCATCTAA

Upstream 100 bases:

>100_bases
AGCCGGGACTAACCGCTCCCCTGCTTAACAGAGGCCTCGCTTATGCGGGGCCTTTTTTTTTGCTACACTGCGGCCAGTTT
CAGGCGGTATGTGAAAAATC

Downstream 100 bases:

>100_bases
TAGAGGATCGCGAATTTGTCCCAGCTGCGGGTGGGTTGATGGGGCTCGGTTAACACTCGGTCAACCCGCGCGCTGCGCGG
CCCCCCGGCTTTAAGCCAGG

Product: sulfur transfer protein TusE

Products: NA

Alternate protein names: tRNA 2-thiouridine synthesizing protein E [H]

Number of amino acids: Translated: 109; Mature: 109

Protein sequence:

>109_residues
MFIFEGNEIETDSEGYLKDTTQWSEAMAEVIAAQEGITLAVEHWEVVRFVREFYLEFNTSPAIRMLVKAMANKFGEEKGN
SRYLYRLFPKGPAKQATKIAGLPKPVKCI

Sequences:

>Translated_109_residues
MFIFEGNEIETDSEGYLKDTTQWSEAMAEVIAAQEGITLAVEHWEVVRFVREFYLEFNTSPAIRMLVKAMANKFGEEKGN
SRYLYRLFPKGPAKQATKIAGLPKPVKCI
>Mature_109_residues
MFIFEGNEIETDSEGYLKDTTQWSEAMAEVIAAQEGITLAVEHWEVVRFVREFYLEFNTSPAIRMLVKAMANKFGEEKGN
SRYLYRLFPKGPAKQATKIAGLPKPVKCI

Specific function: Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Could accept sulfur from tusD [H]

COG id: COG2920

COG function: function code P; Dissimilatory sulfite reductase (desulfoviridin), gamma subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dsrC/tusE family [H]

Homologues:

Organism=Escherichia coli, GI87081811, Length=109, Percent_Identity=86.2385321100918, Blast_Score=200, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007453 [H]

Pfam domain/function: PF04358 DsrC [H]

EC number: NA

Molecular weight: Translated: 12422; Mature: 12422

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIFEGNEIETDSEGYLKDTTQWSEAMAEVIAAQEGITLAVEHWEVVRFVREFYLEFNTS
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCC
PAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFIFEGNEIETDSEGYLKDTTQWSEAMAEVIAAQEGITLAVEHWEVVRFVREFYLEFNTS
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCC
PAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGLPKPVKCI
HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA