Click here to switch to the map view.

The map label for this gene is sorC [H]

Identifier: 238893629

GI number: 238893629

Start: 1485202

End: 1486152

Strand: Reverse

Name: sorC [H]

Synonym: KP1_1543

Alternate gene names: 238893629

Gene position: 1486152-1485202 (Counterclockwise)

Preceding gene: 238893632

Following gene: 238893628

Centisome position: 28.32

GC content: 57.2

Gene sequence:

>951_bases
ATGGCTAAGCAGGATGAACAACGGCTATTGGTTAAGATTGCCACGCTTTACTATCTGGAAGGACGAAAGCAGTCTGATAT
CGCCCAACTTCTCTCGCTGTCTCAGTCATTTGTCTCCCGCGCCATTACCCGCTGCCAGAAAGAAGGCGTCGTCAAGATCA
GCGTCGTTCAGCCGTCCAACATCTTTCTGAAGCTGGAAAAAGGGCTTGAGGATCGCTACGGCCTTAAGCAGGCGGTGGTG
GTGGATACCGAGGAAGAGGCCAGCGATCATACCATCAAGCGGGCGATTGGCTCCGCCGCCGCCCACTATCTGGAAACCCG
GCTGCGGCCAAAAGATCTGATTGGCGTCTCCTCGTGGAGCTCAACCATTCGCGCGATGGTCGATGAAGTTCATGCGCAAA
ACCTGAAAGCCAGCGGCGTGATCCAACTGCTCGGCGGCGTCGGGCCAAACGGTAACGTGCAGGCGACGATTCTTACCCAG
ACCCTCGCCCAGCGCCTGAATTGCGACGCCTGGCTGCTGCCGTCACAGAGCATCGAAGGATCCATGGAGGAGCGCAACCG
GCTGCTGGCCAGCAAAGACGTCGCTGACGTGGTGTCGCGCTTTGATGAAGTGGATATCGCCATCGTCGGCATCGGCATTC
TCGAACCCTCTCAACTGCTGAAAACCTCCGGTAACTACTATCACGAAGATATGCTGCAGGTGCTGGCGGCGCGCGGCGCG
GTGGGTGATATCTGCCTGCACTACTACGACAAAAACGGCCATCCGGTGTTACGCGATGATGAAGATCCGGTGATCGGTAT
GGCGCTGGAGAAGGTCAAAAAATGCCCGAACGTGGTCGCGCTGGCCGGCGGTACCGACAAAGTCGCGGCCATCAAAGGCG
CCCTCACCGGCGGCTACATTGATGTTTTAATCACCGATTACCCTACCGCCCGAATGCTGGTTAGCGACTAA

Upstream 100 bases:

>100_bases
ACTTAAGTCTGATTTTTTTTCGCGTATGATAAAAGTCACTACGATAATGGCTGCAGCTAACCGCCTGAAGAAAGGCGATA
AATGATTTTCGAGGATTAAT

Downstream 100 bases:

>100_bases
CCTGCCGCGCTGGTTGCCTCTCTGCCGCCCTGACGTGCTTTTTTAGCTTCAGGGCTGGCTCTGGTAAAACATTTAAATTC
AATCAGTTAATCAACCACTC

Product: putative sugar-binding region

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFVSRAITRCQKEGVVKISVVQPSNIFLKLEKGLEDRYGLKQAVV
VDTEEEASDHTIKRAIGSAAAHYLETRLRPKDLIGVSSWSSTIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQ
TLAQRLNCDAWLLPSQSIEGSMEERNRLLASKDVADVVSRFDEVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLAARGA
VGDICLHYYDKNGHPVLRDDEDPVIGMALEKVKKCPNVVALAGGTDKVAAIKGALTGGYIDVLITDYPTARMLVSD

Sequences:

>Translated_316_residues
MAKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFVSRAITRCQKEGVVKISVVQPSNIFLKLEKGLEDRYGLKQAVV
VDTEEEASDHTIKRAIGSAAAHYLETRLRPKDLIGVSSWSSTIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQ
TLAQRLNCDAWLLPSQSIEGSMEERNRLLASKDVADVVSRFDEVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLAARGA
VGDICLHYYDKNGHPVLRDDEDPVIGMALEKVKKCPNVVALAGGTDKVAAIKGALTGGYIDVLITDYPTARMLVSD
>Mature_315_residues
AKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFVSRAITRCQKEGVVKISVVQPSNIFLKLEKGLEDRYGLKQAVVV
DTEEEASDHTIKRAIGSAAAHYLETRLRPKDLIGVSSWSSTIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQT
LAQRLNCDAWLLPSQSIEGSMEERNRLLASKDVADVVSRFDEVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLAARGAV
GDICLHYYDKNGHPVLRDDEDPVIGMALEKVKKCPNVVALAGGTDKVAAIKGALTGGYIDVLITDYPTARMLVSD

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=313, Percent_Identity=26.517571884984, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI87082414, Length=309, Percent_Identity=27.1844660194175, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34414; Mature: 34283

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFVSRAITRCQKEGVVKISVVQPSN
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
IFLKLEKGLEDRYGLKQAVVVDTEEEASDHTIKRAIGSAAAHYLETRLRPKDLIGVSSWS
EEEEEECCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHEECHHHH
STIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQTLAQRLNCDAWLLPSQSIEG
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCEEECCCCCCCC
SMEERNRLLASKDVADVVSRFDEVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLAARGA
CHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHCCC
VGDICLHYYDKNGHPVLRDDEDPVIGMALEKVKKCPNVVALAGGTDKVAAIKGALTGGYI
HHHEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEE
DVLITDYPTARMLVSD
EEEEECCCCCEEEECC
>Mature Secondary Structure 
AKQDEQRLLVKIATLYYLEGRKQSDIAQLLSLSQSFVSRAITRCQKEGVVKISVVQPSN
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
IFLKLEKGLEDRYGLKQAVVVDTEEEASDHTIKRAIGSAAAHYLETRLRPKDLIGVSSWS
EEEEEECCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHEECHHHH
STIRAMVDEVHAQNLKASGVIQLLGGVGPNGNVQATILTQTLAQRLNCDAWLLPSQSIEG
HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHCCCEEECCCCCCCC
SMEERNRLLASKDVADVVSRFDEVDIAIVGIGILEPSQLLKTSGNYYHEDMLQVLAARGA
CHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHHHCCC
VGDICLHYYDKNGHPVLRDDEDPVIGMALEKVKKCPNVVALAGGTDKVAAIKGALTGGYI
HHHEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCEE
DVLITDYPTARMLVSD
EEEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]