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The map label for this gene is rhaQ [H]

Identifier: 238892315

GI number: 238892315

Start: 63509

End: 64513

Strand: Reverse

Name: rhaQ [H]

Synonym: KP1_0066

Alternate gene names: 238892315

Gene position: 64513-63509 (Counterclockwise)

Preceding gene: 238892316

Following gene: 238892314

Centisome position: 1.23

GC content: 60.9

Gene sequence:

>1005_bases
ATGAGCAAAATGATGGTATCTGAAGAGATGAAAAACGCCCCGGCCGCGCCGTCGCCGCTGCGCCGCCTGCTGTGCTGGGA
AGGGTTTTTACTGGCGGTCACCCTGGCGGTATTTATCGGCAACGCCGTGGCTTCCCCGTACTTCCTCAATATCTGGAACC
TGTCGGACGCCACCTTTACCTTTACCGAGAAGGCGATCGTCGTCCTGCCGATGGCGATGCTGATTATCGCCCGGGAAATC
GATCTGTCGGTAGCCTCGACGATGGCGCTCAGCTCAACGGTGATGGGCTTCTGCGCGGCAGCGGGGATGGACACTCCGCT
GCTGGTGGTCATCGGCCTGGGCGTAGGTCTGCTGTGCGGCCTGTTCAACGGCTTGCTGGTGACCCGCTTTAACCTGTCGT
CCATTGTGATCACCATCGGCACCATGAGCCTGTATCGCGGCATCACCTATATCCTGCTGGGCGATCAGGCACTCAATCAC
TATCCGGAGAGCTTTGCCTGGTTCGGCCAGGGGTACGTGTGGGGGGCGCTCTCTTTTGAGTTTGCGCTGTTTATCCTCCT
CGCGGCCGCCTTCACCTTCCTGCTGCATAAAACCAACTTTGGTCGCCGGACCTACGCCATCGGCAATAACCCGACCGGCG
CCTGGTTCTCTGGGATCAACGTTAAGCGTCATAACCTGGTGCTGTTCGCGCTGGTTGGGCTGATGGCCGGGCTGGCGGCG
GTCCTGCTGACCTCACGGCTCGGCAGTACCCGCCCCACCCTGGCGATGGGCTGGGAGCTGGCGGTTGTCACCATGGCGGT
GCTCGGCGGCGTCAATATTCTCGGCGGCTCCGGCAGCATGCCCGGGGTGATCATCGCCGCCTTTCTGATGGGGCTGGTGA
CCTTCGGCCTGAGCCTGCTGAACGTCCCCGGCATCGTGATGTCGGTGATTATCGGCGCCATGCTGATCGTGGTGATCTCC
CTGCCGATTATTACCCGGCGGATGATGCAGCGAAGACGATGTTAA

Upstream 100 bases:

>100_bases
TCGTCATGGCGGTGCTGCTCAACGAGCGCGGCAATCGCGGTCACGGGCGGTTAATCCTGCGCAACGCGGCGTTAGCCCGA
CAGAAACAGGCGGTGAAATC

Downstream 100 bases:

>100_bases
TTTCCCCCTCACCCTGGCCCCCTCCCTGCGGGAGAAGGTCGGGGTGAGGGGAAACGGATTTCCCAAAATCAACATTAAGG
AGAATTATCATGAGTTTTAT

Product: rhamnose ABC transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSKMMVSEEMKNAPAAPSPLRRLLCWEGFLLAVTLAVFIGNAVASPYFLNIWNLSDATFTFTEKAIVVLPMAMLIIAREI
DLSVASTMALSSTVMGFCAAAGMDTPLLVVIGLGVGLLCGLFNGLLVTRFNLSSIVITIGTMSLYRGITYILLGDQALNH
YPESFAWFGQGYVWGALSFEFALFILLAAAFTFLLHKTNFGRRTYAIGNNPTGAWFSGINVKRHNLVLFALVGLMAGLAA
VLLTSRLGSTRPTLAMGWELAVVTMAVLGGVNILGGSGSMPGVIIAAFLMGLVTFGLSLLNVPGIVMSVIIGAMLIVVIS
LPIITRRMMQRRRC

Sequences:

>Translated_334_residues
MSKMMVSEEMKNAPAAPSPLRRLLCWEGFLLAVTLAVFIGNAVASPYFLNIWNLSDATFTFTEKAIVVLPMAMLIIAREI
DLSVASTMALSSTVMGFCAAAGMDTPLLVVIGLGVGLLCGLFNGLLVTRFNLSSIVITIGTMSLYRGITYILLGDQALNH
YPESFAWFGQGYVWGALSFEFALFILLAAAFTFLLHKTNFGRRTYAIGNNPTGAWFSGINVKRHNLVLFALVGLMAGLAA
VLLTSRLGSTRPTLAMGWELAVVTMAVLGGVNILGGSGSMPGVIIAAFLMGLVTFGLSLLNVPGIVMSVIIGAMLIVVIS
LPIITRRMMQRRRC
>Mature_333_residues
SKMMVSEEMKNAPAAPSPLRRLLCWEGFLLAVTLAVFIGNAVASPYFLNIWNLSDATFTFTEKAIVVLPMAMLIIAREID
LSVASTMALSSTVMGFCAAAGMDTPLLVVIGLGVGLLCGLFNGLLVTRFNLSSIVITIGTMSLYRGITYILLGDQALNHY
PESFAWFGQGYVWGALSFEFALFILLAAAFTFLLHKTNFGRRTYAIGNNPTGAWFSGINVKRHNLVLFALVGLMAGLAAV
LLTSRLGSTRPTLAMGWELAVVTMAVLGGVNILGGSGSMPGVIIAAFLMGLVTFGLSLLNVPGIVMSVIIGAMLIVVISL
PIITRRMMQRRRC

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=300, Percent_Identity=35.6666666666667, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=31.4024390243902, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI145693152, Length=342, Percent_Identity=30.1169590643275, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790191, Length=275, Percent_Identity=32.3636363636364, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1788896, Length=296, Percent_Identity=30.4054054054054, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789992, Length=135, Percent_Identity=39.2592592592593, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788471, Length=218, Percent_Identity=30.7339449541284, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787793, Length=312, Percent_Identity=31.7307692307692, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87082395, Length=282, Percent_Identity=27.6595744680851, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI145693214, Length=213, Percent_Identity=28.169014084507, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35771; Mature: 35639

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKMMVSEEMKNAPAAPSPLRRLLCWEGFLLAVTLAVFIGNAVASPYFLNIWNLSDATFT
CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEE
FTEKAIVVLPMAMLIIAREIDLSVASTMALSSTVMGFCAAAGMDTPLLVVIGLGVGLLCG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LFNGLLVTRFNLSSIVITIGTMSLYRGITYILLGDQALNHYPESFAWFGQGYVWGALSFE
HHHHHHHEEECHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCHHHHHHCCCEEEHHHHHH
FALFILLAAAFTFLLHKTNFGRRTYAIGNNPTGAWFSGINVKRHNLVLFALVGLMAGLAA
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VLLTSRLGSTRPTLAMGWELAVVTMAVLGGVNILGGSGSMPGVIIAAFLMGLVTFGLSLL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
NVPGIVMSVIIGAMLIVVISLPIITRRMMQRRRC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKMMVSEEMKNAPAAPSPLRRLLCWEGFLLAVTLAVFIGNAVASPYFLNIWNLSDATFT
CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEE
FTEKAIVVLPMAMLIIAREIDLSVASTMALSSTVMGFCAAAGMDTPLLVVIGLGVGLLCG
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LFNGLLVTRFNLSSIVITIGTMSLYRGITYILLGDQALNHYPESFAWFGQGYVWGALSFE
HHHHHHHEEECHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCHHHHHHCCCEEEHHHHHH
FALFILLAAAFTFLLHKTNFGRRTYAIGNNPTGAWFSGINVKRHNLVLFALVGLMAGLAA
HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VLLTSRLGSTRPTLAMGWELAVVTMAVLGGVNILGGSGSMPGVIIAAFLMGLVTFGLSLL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
NVPGIVMSVIIGAMLIVVISLPIITRRMMQRRRC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]