| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is mmgC [H]
Identifier: 238028608
GI number: 238028608
Start: 3492440
End: 3494227
Strand: Reverse
Name: mmgC [H]
Synonym: bglu_1g30720
Alternate gene names: 238028608
Gene position: 3494227-3492440 (Counterclockwise)
Preceding gene: 238028609
Following gene: 238028607
Centisome position: 89.45
GC content: 65.6
Gene sequence:
>1788_bases ATGGGACAGTACGTTGCCCCGCTGCGCGACATGCAATTCGTGCTGCACGAGTTGCTCAACGTCGAAGCCGAACTGAAGCA GATGCCGAAACACGCGGATCTCGATGCCGACACCATCAATCAGGTGCTCGAGGAAGCCGGCAAGTTCTGCGCCGAGGTGC TGTTCCCGCTCAACCAGGTGGGCGACCGCGAAGGCTGCAAGTACCAGGGTGACGGCGTGGTCACCACGCCCACCGGCTTC AAGGATGCTTACCGCCAGTACATCGACGCCGGCTGGCCCGCGCTCGGGTGCGACCCCGAGTATGGCGGCCAGGGCCTGCC CGCGTTCGTCAACAACGCGCTCTACGAGATGATGAACTCGGCGAACCAGGCCTGGACCATGTATCCGGGCCTGTCGCACG GCGCCTACGAATGCCTGCACGCGCACGGCGCGCCGGAATTGCAGCAGCAATACCTGCCGAAGCTCGTGTCGGGCGAATGG ACCGGCACCATGTGCCTGACCGAGCCGCATTGCGGCACCGACCTCGGCATCCTGCGCACCAAGGCCGAGCCGATCGGCGA CGGCGCCTACTCGATCAGCGGCACGAAGATCTTCATCTCGAGCGGCGAGCACGACATGTCGGCCAACATCGTCCACCTGG TGCTCGCGCGCCTGCCGGACGCGCCGCAGGGCACCAAGGGCATTTCGCTGTTCATCGTGCCGAAGTTCATCCCCGACGCC TCGGGCGAGCCGGGCGAGCGCAACGGCATCAAGTGCGGCTCGATCGAGCACAAGATGGGCATCCACGGCAACGCCACCTG CGTGATGAATCTCGACAACGCGAAGGGCTGGCTGGTGGGCGAGCCCAACAAGGGCTTGAACGCGATGTTCGTGATGATGA ACGCCGCGCGCCTCGGCGTCGGGATGCAGGGTCTCGGCCTGACCGAGGTGGCCTACCAGAACTCGCTGGCCTACGCGAAG GAGCGCCTGCAGATGCGCTCGCTGACGGGCCCGAAGGCGCCTGAGAAGGCCGCCGACCCGATCATCGTGCACCCCGACGT GCGCCGCATGCTGCTCACGCAGAAGGCCTATGCGGAAGGCGCGCGCGCGTTCACGTACTGGGCCGCGCTGCAGATCGACA AGGAGCTGTCGCACGGCGACGAGTCGGTGCGCAAGGAGTCGGCCGACCTGGTCGCGCTGCTCACGCCGATCATCAAGGCG TTCCTGACCGACAACGCGTTCGAGTGCACCAACCACGCGATGCAGATCTACGGCGGGCACGGCTTCATCTCCGAATGGGG CATGGAGCAGTACGTGCGCGATGCGCGCATCAACATGATCTACGAGGGCACCAACTCGATCCAGTCGCTGGACCTGCTGG GCCGCAAGGTGCTCGGCGACATGGGCGCGAAGCTCAAGAAGTTCGGCGCCATCGTGACCGAGTTCGTCGAGTCCGAGGGC GTGAAGCCCGAGATGGCCGAGTTCATTAATCCGCTGGCCGACATCGGCGAGAAGCTGCAGAAGCTGACCATGGAAATCGG CATGAAGGCGATGCAGAACCCGGACGAGGTGGGCGCAGCCGCGGTGCCGTACCTGCGCACCGCCGGGCACCTCGTGTTCG CCTACTTCTGGGCTCGCATGGCGCGCCTCGCGCTCGACAAGGAAGCCTCGGGCGATCCGTTCTACAAGTCGAAGCTGGCC ACCGCGCGCTTCTATTTCGCGCGCCTGCTGCCCGAGACCGCGGCCACCATCCGCGCCGCGCGCGCCGGCTCGAAGACGCT GATGGAAGTCGACGAAGCGCTGTTCTGA
Upstream 100 bases:
>100_bases CGCTGGAAAAGACGATCGTTTCGTATCAGAGCGAGAGCCGGTAGCGGTGCCGTGACGCCCGCGCGAGGCTCGAGCCAGTG CCCTACCTTTGGAGAGAGTC
Downstream 100 bases:
>100_bases CAACTTGCCCGGGTACGCGCGCCGCATGAGGCGCGTACCCGGGCGCCCGCAGCCGATTCATTTGCCGCGCCGTCCGCAGC CAGCCCCGCCGGGCGCGACG
Product: acyl-CoA dehydrogenase domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 595; Mature: 594
Protein sequence:
>595_residues MGQYVAPLRDMQFVLHELLNVEAELKQMPKHADLDADTINQVLEEAGKFCAEVLFPLNQVGDREGCKYQGDGVVTTPTGF KDAYRQYIDAGWPALGCDPEYGGQGLPAFVNNALYEMMNSANQAWTMYPGLSHGAYECLHAHGAPELQQQYLPKLVSGEW TGTMCLTEPHCGTDLGILRTKAEPIGDGAYSISGTKIFISSGEHDMSANIVHLVLARLPDAPQGTKGISLFIVPKFIPDA SGEPGERNGIKCGSIEHKMGIHGNATCVMNLDNAKGWLVGEPNKGLNAMFVMMNAARLGVGMQGLGLTEVAYQNSLAYAK ERLQMRSLTGPKAPEKAADPIIVHPDVRRMLLTQKAYAEGARAFTYWAALQIDKELSHGDESVRKESADLVALLTPIIKA FLTDNAFECTNHAMQIYGGHGFISEWGMEQYVRDARINMIYEGTNSIQSLDLLGRKVLGDMGAKLKKFGAIVTEFVESEG VKPEMAEFINPLADIGEKLQKLTMEIGMKAMQNPDEVGAAAVPYLRTAGHLVFAYFWARMARLALDKEASGDPFYKSKLA TARFYFARLLPETAATIRAARAGSKTLMEVDEALF
Sequences:
>Translated_595_residues MGQYVAPLRDMQFVLHELLNVEAELKQMPKHADLDADTINQVLEEAGKFCAEVLFPLNQVGDREGCKYQGDGVVTTPTGF KDAYRQYIDAGWPALGCDPEYGGQGLPAFVNNALYEMMNSANQAWTMYPGLSHGAYECLHAHGAPELQQQYLPKLVSGEW TGTMCLTEPHCGTDLGILRTKAEPIGDGAYSISGTKIFISSGEHDMSANIVHLVLARLPDAPQGTKGISLFIVPKFIPDA SGEPGERNGIKCGSIEHKMGIHGNATCVMNLDNAKGWLVGEPNKGLNAMFVMMNAARLGVGMQGLGLTEVAYQNSLAYAK ERLQMRSLTGPKAPEKAADPIIVHPDVRRMLLTQKAYAEGARAFTYWAALQIDKELSHGDESVRKESADLVALLTPIIKA FLTDNAFECTNHAMQIYGGHGFISEWGMEQYVRDARINMIYEGTNSIQSLDLLGRKVLGDMGAKLKKFGAIVTEFVESEG VKPEMAEFINPLADIGEKLQKLTMEIGMKAMQNPDEVGAAAVPYLRTAGHLVFAYFWARMARLALDKEASGDPFYKSKLA TARFYFARLLPETAATIRAARAGSKTLMEVDEALF >Mature_594_residues GQYVAPLRDMQFVLHELLNVEAELKQMPKHADLDADTINQVLEEAGKFCAEVLFPLNQVGDREGCKYQGDGVVTTPTGFK DAYRQYIDAGWPALGCDPEYGGQGLPAFVNNALYEMMNSANQAWTMYPGLSHGAYECLHAHGAPELQQQYLPKLVSGEWT GTMCLTEPHCGTDLGILRTKAEPIGDGAYSISGTKIFISSGEHDMSANIVHLVLARLPDAPQGTKGISLFIVPKFIPDAS GEPGERNGIKCGSIEHKMGIHGNATCVMNLDNAKGWLVGEPNKGLNAMFVMMNAARLGVGMQGLGLTEVAYQNSLAYAKE RLQMRSLTGPKAPEKAADPIIVHPDVRRMLLTQKAYAEGARAFTYWAALQIDKELSHGDESVRKESADLVALLTPIIKAF LTDNAFECTNHAMQIYGGHGFISEWGMEQYVRDARINMIYEGTNSIQSLDLLGRKVLGDMGAKLKKFGAIVTEFVESEGV KPEMAEFINPLADIGEKLQKLTMEIGMKAMQNPDEVGAAAVPYLRTAGHLVFAYFWARMARLALDKEASGDPFYKSKLAT ARFYFARLLPETAATIRAARAGSKTLMEVDEALF
Specific function: Unknown
COG id: COG1960
COG function: function code I; Acyl-CoA dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI4501859, Length=372, Percent_Identity=26.8817204301075, Blast_Score=127, Evalue=3e-29, Organism=Homo sapiens, GI7656849, Length=385, Percent_Identity=25.974025974026, Blast_Score=117, Evalue=4e-26, Organism=Homo sapiens, GI21361497, Length=364, Percent_Identity=27.7472527472527, Blast_Score=113, Evalue=5e-25, Organism=Homo sapiens, GI4557233, Length=316, Percent_Identity=30.0632911392405, Blast_Score=112, Evalue=9e-25, Organism=Homo sapiens, GI4557235, Length=420, Percent_Identity=26.1904761904762, Blast_Score=106, Evalue=8e-23, Organism=Homo sapiens, GI76496475, Length=420, Percent_Identity=26.1904761904762, Blast_Score=105, Evalue=8e-23, Organism=Homo sapiens, GI226958412, Length=447, Percent_Identity=24.6085011185682, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI226958414, Length=396, Percent_Identity=24.4949494949495, Blast_Score=99, Evalue=2e-20, Organism=Homo sapiens, GI4501857, Length=324, Percent_Identity=27.4691358024691, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI4557231, Length=314, Percent_Identity=29.2993630573248, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI187960098, Length=314, Percent_Identity=29.2993630573248, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI4503943, Length=425, Percent_Identity=25.1764705882353, Blast_Score=73, Evalue=8e-13, Organism=Escherichia coli, GI87082384, Length=344, Percent_Identity=26.7441860465116, Blast_Score=115, Evalue=7e-27, Organism=Escherichia coli, GI87081958, Length=402, Percent_Identity=27.363184079602, Blast_Score=82, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17533517, Length=427, Percent_Identity=26.9320843091335, Blast_Score=128, Evalue=8e-30, Organism=Caenorhabditis elegans, GI17508101, Length=355, Percent_Identity=28.4507042253521, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17569725, Length=370, Percent_Identity=29.7297297297297, Blast_Score=119, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17534899, Length=429, Percent_Identity=28.6713286713287, Blast_Score=115, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17506239, Length=406, Percent_Identity=27.0935960591133, Blast_Score=112, Evalue=5e-25, Organism=Caenorhabditis elegans, GI71985184, Length=377, Percent_Identity=27.3209549071618, Blast_Score=106, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17538396, Length=380, Percent_Identity=26.0526315789474, Blast_Score=104, Evalue=1e-22, Organism=Caenorhabditis elegans, GI86563383, Length=398, Percent_Identity=26.8844221105528, Blast_Score=98, Evalue=1e-20, Organism=Caenorhabditis elegans, GI86563381, Length=398, Percent_Identity=26.8844221105528, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17570075, Length=318, Percent_Identity=25.1572327044025, Blast_Score=89, Evalue=5e-18, Organism=Caenorhabditis elegans, GI71990804, Length=230, Percent_Identity=30, Blast_Score=89, Evalue=8e-18, Organism=Caenorhabditis elegans, GI32563615, Length=231, Percent_Identity=29.4372294372294, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71985192, Length=252, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71982178, Length=249, Percent_Identity=28.1124497991968, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17551932, Length=312, Percent_Identity=22.7564102564103, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI21356377, Length=440, Percent_Identity=25.4545454545455, Blast_Score=118, Evalue=1e-26, Organism=Drosophila melanogaster, GI24646207, Length=387, Percent_Identity=25.5813953488372, Blast_Score=112, Evalue=6e-25, Organism=Drosophila melanogaster, GI24666513, Length=383, Percent_Identity=26.1096605744125, Blast_Score=105, Evalue=6e-23, Organism=Drosophila melanogaster, GI281363737, Length=447, Percent_Identity=24.1610738255034, Blast_Score=105, Evalue=8e-23, Organism=Drosophila melanogaster, GI21355753, Length=374, Percent_Identity=25.9358288770053, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24660351, Length=314, Percent_Identity=28.9808917197452, Blast_Score=95, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006089 - InterPro: IPR006092 - InterPro: IPR006090 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]
EC number: NA
Molecular weight: Translated: 65076; Mature: 64945
Theoretical pI: Translated: 5.62; Mature: 5.62
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQYVAPLRDMQFVLHELLNVEAELKQMPKHADLDADTINQVLEEAGKFCAEVLFPLNQV CCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GDREGCKYQGDGVVTTPTGFKDAYRQYIDAGWPALGCDPEYGGQGLPAFVNNALYEMMNS CCCCCCEECCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC ANQAWTMYPGLSHGAYECLHAHGAPELQQQYLPKLVSGEWTGTMCLTEPHCGTDLGILRT CCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHEEE KAEPIGDGAYSISGTKIFISSGEHDMSANIVHLVLARLPDAPQGTKGISLFIVPKFIPDA CCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCC SGEPGERNGIKCGSIEHKMGIHGNATCVMNLDNAKGWLVGEPNKGLNAMFVMMNAARLGV CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHCC GMQGLGLTEVAYQNSLAYAKERLQMRSLTGPKAPEKAADPIIVHPDVRRMLLTQKAYAEG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEECHHHHHHHHHHHHHHCC ARAFTYWAALQIDKELSHGDESVRKESADLVALLTPIIKAFLTDNAFECTNHAMQIYGGH CHHHHHHHHHEECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCC GFISEWGMEQYVRDARINMIYEGTNSIQSLDLLGRKVLGDMGAKLKKFGAIVTEFVESEG CCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VKPEMAEFINPLADIGEKLQKLTMEIGMKAMQNPDEVGAAAVPYLRTAGHLVFAYFWARM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHH ARLALDKEASGDPFYKSKLATARFYFARLLPETAATIRAARAGSKTLMEVDEALF HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure GQYVAPLRDMQFVLHELLNVEAELKQMPKHADLDADTINQVLEEAGKFCAEVLFPLNQV CCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GDREGCKYQGDGVVTTPTGFKDAYRQYIDAGWPALGCDPEYGGQGLPAFVNNALYEMMNS CCCCCCEECCCEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC ANQAWTMYPGLSHGAYECLHAHGAPELQQQYLPKLVSGEWTGTMCLTEPHCGTDLGILRT CCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHEEE KAEPIGDGAYSISGTKIFISSGEHDMSANIVHLVLARLPDAPQGTKGISLFIVPKFIPDA CCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCC SGEPGERNGIKCGSIEHKMGIHGNATCVMNLDNAKGWLVGEPNKGLNAMFVMMNAARLGV CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHCC GMQGLGLTEVAYQNSLAYAKERLQMRSLTGPKAPEKAADPIIVHPDVRRMLLTQKAYAEG CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEECHHHHHHHHHHHHHHCC ARAFTYWAALQIDKELSHGDESVRKESADLVALLTPIIKAFLTDNAFECTNHAMQIYGGH CHHHHHHHHHEECHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEECCC GFISEWGMEQYVRDARINMIYEGTNSIQSLDLLGRKVLGDMGAKLKKFGAIVTEFVESEG CCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VKPEMAEFINPLADIGEKLQKLTMEIGMKAMQNPDEVGAAAVPYLRTAGHLVFAYFWARM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHH ARLALDKEASGDPFYKSKLATARFYFARLLPETAATIRAARAGSKTLMEVDEALF HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8759838; 8969508; 9384377 [H]