| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is fadN [H]
Identifier: 238028607
GI number: 238028607
Start: 3489880
End: 3492315
Strand: Reverse
Name: fadN [H]
Synonym: bglu_1g30710
Alternate gene names: 238028607
Gene position: 3492315-3489880 (Counterclockwise)
Preceding gene: 238028608
Following gene: 238028606
Centisome position: 89.4
GC content: 68.76
Gene sequence:
>2436_bases GTGAGCAATTTCATCATTCGCAAGGTCGCCGTGCTCGGCGCCGGCGTGATGGGTGCGCAGATCGCCGCGCATCTCGTCAA CGCGCGCGTGCCGGTGCTGCTGTTCGATCTGCCGGCCAAGGAAGGCCCCAAGAACGGCATCGCGCTCAAGGCCATCGAGA ACCTGAAGAAACTGTCGCCGGCGCCGTTCGGCGTGAAGGACGACGCCAAGTACCTGGTGCCCGCGAACTACGAGGACGAC CTCGACCAGCTCGCCGAATGCGACGTGGTGATCGAGGCGATCGCCGAGCGCATGGACTGGAAGCACGATCTCTACAAGAA GGTCGCGCCGCACATCGGCCCCCACGCGATCTTCGCGTCGAACACCTCGGGCCTGTCGATCACGGCACTGTCGGAGGGCT TCACCGACGAGCTGAAGGCGCGCTTCTGCGGCGTCCACTTCTTCAATCCGCCGCGCTACATGCACCTCGTCGAACTGATC CCGACCGCCCACACGCGCGGCGAGATCCTCGACCAGCTCGAGACCTTCCTGACCAGCGTGGTCGGCAAGGGCGTGGTGCG CGCCAAGGACACGCCGAACTTCATCGCCAACCGCGTCGGCATCTTCTCGATCCTCGCGGTGATCACCGAGGCCGCCAAGT TCGGCCTGCGCTTCGACGAGGTGGACGACCTGACCGGCGTGCGGCTCGGCCGCGCCAAGTCGGCGACGTTCCGCACCGCC GACGTGGTGGGCCTCGACACCATGGCGCACGTCATCAAGACGATGCAGGACAACCTCGCCGACGATCCGTTCTTCCCGGT CTACGAGACGCCCGCCGTGCTCGCCGAGCTCGTCAAGCAGGGCGCGCTCGGCCAGAAGACGGGTGCCGGCTTCTACAAGA AGGAAGGCCGCGCGATCAAGGTGCTCGATCCGAAGTCGGGCAGCTACGTGGACGGCGGCGCCAAGGCCGACGAGACGGTG GCGCGCATCCTCAAGCGAGCGCCCGCCGAGCGCCTGAAGCTGCTGCGCGAGACCCAGCATCCGCACGCGCAGTTCCTGTG GGCGGTGTTCCGCGACGTGTTCCATTACATCGGCGTCCACCTCGAATCGATCGCCGACAACGCGCGCGACGTGGACCTCG CGATCCGCTGGGGCTTCGGCTGGAACGAAGGCCCGTTCGAGGGCTGGCAGGCGGCCGGCTGGAAGCAGGTGGCCGAGTGG GTGCAGGAGGACATCGCGGCCGGCAAGGCGCTCGCGAGCGTGCCGCTGCCGTCGTGGGTGCTCGAGGGCGCGGTGGCCGA GCAGGGCGGGGTGCATACCGCCGAGGGTTCGTGGTCGCCGGCCGCCGGCAAGTTCGTGCCGCGCTCGTCGCTGCCCGTCT ACGAGCGCCAGGTGTTCCGCGCGCCGCTCCTGGGCGAGGCGGGGCGTGATCCGGCCAAGTACGGCAGGACGCTGTTCGAG ACCGATTCGGTGCGCGCCTGGGTGGACGACCGCGCCGGCGAGGACGACGTGGTGATCGTCTCGTTCAAGTCGAAGATGAA CACCATCGGCCCGGGCGTGATCGACGGCCTCGCGCAGGCCATCGAGCTTGCCGAGCAGGACTACCGCGCCGTGGTGATCT GGCAGCCGACCTCGCTCAAGCTCGGCACGCCGGGCGGCCCGTTCTCGGCCGGCGCGAACCTCGAGGAGGCGATGCCCGCC TTCATGATGGGCGGCGCCAAGGGCATCGAGCCGTTCGTGAAGAAATTCCAGCAGGGCATGCTGCGCGTGAAGTACGCCAA CGTGCCGGTGGTCTCGGCCGTGTCGGGCATCGCGCTCGGCGGCGGCTGCGAACTGATGCTGCACAGCGCGAAGCGGGTGG TGCACGTCGAGAGCTACGTCGGCCTCGTCGAGGTGGGCGTGGGCCTGGTGCCGGCGGGCGGCGGCCTCAAGGAGGCGGCG CTGCGCGCCGCCGAGGCGGCCACGGCGGCCGGCGCCACCAGCGAGTTGCTGAAGTTCGTCGCGAAGTCGTTCGAGAACGC GGCGATGGCCAAGGTCTCCACCTCGGCGCACGACGCGCGCGCGATGGGTTACCTGAAGCCGTCGGACACCATCGTGTTCA ACGTGTTCGAACTGCTCGACGTGGCCAAGCGCGAAGCGCGCGCGCTGGCCGCCACCGGCTACCGCCCGCCCCTCAGGGCC ACCGAGATTCCGGTGGCCGGCCGCTCGGCGATCTCGACCATCAAGGCGCAGCTCGTCAACATGCGCGACGGCCGCTTCAT CAGCGACCACGATTTCCTGATCGCGAGCCGGATCGCGGAAGCGGTGTGCGGCGGCAACGTCGAGGCCGGCAGCACGGTGG ACGAGGAATGGCTGCTCGCGCTGGAGCGCCGCGCGTTCGTCGAGCTGCTCGGCACGCAGAAGACGCAGGAGCGGATCATG GGCATGTTGCAGACCGGCAAGCCGGTGCGCAACTGA
Upstream 100 bases:
>100_bases CATGAGGCGCGTACCCGGGCGCCCGCAGCCGATTCATTTGCCGCGCCGTCCGCAGCCAGCCCCGCCGGGCGCGACGCGTG GCGCTATCCGGAGGAATCCC
Downstream 100 bases:
>100_bases GCGGGCCGCGGGACACTTTGGATCGGACCCGTTGCGGCGCGAGCGCGCCGTGCCGGGTCGACAGGAGCCACAAATGAGCA AACAGCTGCAAGACGCATAC
Product: NAD-binding 3-hydroxyacyl-CoA dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 811; Mature: 810
Protein sequence:
>811_residues MSNFIIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGVKDDAKYLVPANYEDD LDQLAECDVVIEAIAERMDWKHDLYKKVAPHIGPHAIFASNTSGLSITALSEGFTDELKARFCGVHFFNPPRYMHLVELI PTAHTRGEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGVRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFPVYETPAVLAELVKQGALGQKTGAGFYKKEGRAIKVLDPKSGSYVDGGAKADETV ARILKRAPAERLKLLRETQHPHAQFLWAVFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEW VQEDIAAGKALASVPLPSWVLEGAVAEQGGVHTAEGSWSPAAGKFVPRSSLPVYERQVFRAPLLGEAGRDPAKYGRTLFE TDSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEQDYRAVVIWQPTSLKLGTPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQQGMLRVKYANVPVVSAVSGIALGGGCELMLHSAKRVVHVESYVGLVEVGVGLVPAGGGLKEAA LRAAEAATAAGATSELLKFVAKSFENAAMAKVSTSAHDARAMGYLKPSDTIVFNVFELLDVAKREARALAATGYRPPLRA TEIPVAGRSAISTIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGNVEAGSTVDEEWLLALERRAFVELLGTQKTQERIM GMLQTGKPVRN
Sequences:
>Translated_811_residues MSNFIIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGVKDDAKYLVPANYEDD LDQLAECDVVIEAIAERMDWKHDLYKKVAPHIGPHAIFASNTSGLSITALSEGFTDELKARFCGVHFFNPPRYMHLVELI PTAHTRGEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGVRLGRAKSATFRTA DVVGLDTMAHVIKTMQDNLADDPFFPVYETPAVLAELVKQGALGQKTGAGFYKKEGRAIKVLDPKSGSYVDGGAKADETV ARILKRAPAERLKLLRETQHPHAQFLWAVFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEW VQEDIAAGKALASVPLPSWVLEGAVAEQGGVHTAEGSWSPAAGKFVPRSSLPVYERQVFRAPLLGEAGRDPAKYGRTLFE TDSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEQDYRAVVIWQPTSLKLGTPGGPFSAGANLEEAMPA FMMGGAKGIEPFVKKFQQGMLRVKYANVPVVSAVSGIALGGGCELMLHSAKRVVHVESYVGLVEVGVGLVPAGGGLKEAA LRAAEAATAAGATSELLKFVAKSFENAAMAKVSTSAHDARAMGYLKPSDTIVFNVFELLDVAKREARALAATGYRPPLRA TEIPVAGRSAISTIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGNVEAGSTVDEEWLLALERRAFVELLGTQKTQERIM GMLQTGKPVRN >Mature_810_residues SNFIIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSPAPFGVKDDAKYLVPANYEDDL DQLAECDVVIEAIAERMDWKHDLYKKVAPHIGPHAIFASNTSGLSITALSEGFTDELKARFCGVHFFNPPRYMHLVELIP TAHTRGEILDQLETFLTSVVGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGVRLGRAKSATFRTAD VVGLDTMAHVIKTMQDNLADDPFFPVYETPAVLAELVKQGALGQKTGAGFYKKEGRAIKVLDPKSGSYVDGGAKADETVA RILKRAPAERLKLLRETQHPHAQFLWAVFRDVFHYIGVHLESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWV QEDIAAGKALASVPLPSWVLEGAVAEQGGVHTAEGSWSPAAGKFVPRSSLPVYERQVFRAPLLGEAGRDPAKYGRTLFET DSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEQDYRAVVIWQPTSLKLGTPGGPFSAGANLEEAMPAF MMGGAKGIEPFVKKFQQGMLRVKYANVPVVSAVSGIALGGGCELMLHSAKRVVHVESYVGLVEVGVGLVPAGGGLKEAAL RAAEAATAAGATSELLKFVAKSFENAAMAKVSTSAHDARAMGYLKPSDTIVFNVFELLDVAKREARALAATGYRPPLRAT EIPVAGRSAISTIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGNVEAGSTVDEEWLLALERRAFVELLGTQKTQERIMG MLQTGKPVRN
Specific function: Involved in the degradation of long-chain fatty acids [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Mitochondria or Peroxisomes [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 3-hydroxyacyl-CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI296179429, Length=303, Percent_Identity=34.3234323432343, Blast_Score=126, Evalue=8e-29, Organism=Homo sapiens, GI296179427, Length=316, Percent_Identity=32.9113924050633, Blast_Score=122, Evalue=2e-27, Organism=Homo sapiens, GI20127408, Length=299, Percent_Identity=29.0969899665552, Blast_Score=90, Evalue=8e-18, Organism=Homo sapiens, GI68989263, Length=429, Percent_Identity=23.5431235431235, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI261878539, Length=429, Percent_Identity=23.5431235431235, Blast_Score=85, Evalue=2e-16, Organism=Escherichia coli, GI1787661, Length=313, Percent_Identity=30.9904153354633, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1790281, Length=207, Percent_Identity=28.9855072463768, Blast_Score=81, Evalue=3e-16, Organism=Escherichia coli, GI1788682, Length=333, Percent_Identity=26.4264264264264, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17553560, Length=299, Percent_Identity=32.1070234113712, Blast_Score=117, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17549919, Length=301, Percent_Identity=31.5614617940199, Blast_Score=115, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17563036, Length=294, Percent_Identity=30.2721088435374, Blast_Score=105, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17558304, Length=391, Percent_Identity=28.1329923273657, Blast_Score=104, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17508951, Length=391, Percent_Identity=29.156010230179, Blast_Score=99, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17508953, Length=391, Percent_Identity=29.156010230179, Blast_Score=99, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25144276, Length=294, Percent_Identity=32.9931972789116, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71985923, Length=419, Percent_Identity=25.2983293556086, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71985930, Length=407, Percent_Identity=21.6216216216216, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI19921000, Length=347, Percent_Identity=25.6484149855908, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24583077, Length=347, Percent_Identity=25.3602305475504, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24583079, Length=347, Percent_Identity=25.3602305475504, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI45549573, Length=228, Percent_Identity=26.7543859649123, Blast_Score=68, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =1.1.1.35 [H]
Molecular weight: Translated: 87437; Mature: 87306
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNFIIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSP CCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHCCC APFGVKDDAKYLVPANYEDDLDQLAECDVVIEAIAERMDWKHDLYKKVAPHIGPHAIFAS CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEEEC NTSGLSITALSEGFTDELKARFCGVHFFNPPRYMHLVELIPTAHTRGEILDQLETFLTSV CCCCEEEEEECCCCHHHHHHHHHCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGVRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHH DVVGLDTMAHVIKTMQDNLADDPFFPVYETPAVLAELVKQGALGQKTGAGFYKKEGRAIK HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEE VLDPKSGSYVDGGAKADETVARILKRAPAERLKLLRETQHPHAQFLWAVFRDVFHYIGVH EECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWVQEDIAAGKALASVPLPSWV HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCHHHHCCCCHHHH LEGAVAEQGGVHTAEGSWSPAAGKFVPRSSLPVYERQVFRAPLLGEAGRDPAKYGRTLFE HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCC TDSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEQDYRAVVIWQPTSLK CCCHHEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEE LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYANVPVVSAVSGIALG ECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHCCEEC GGCELMLHSAKRVVHVESYVGLVEVGVGLVPAGGGLKEAALRAAEAATAAGATSELLKFV CCHHHHHHHHHHHEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH AKSFENAAMAKVSTSAHDARAMGYLKPSDTIVFNVFELLDVAKREARALAATGYRPPLRA HHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TEIPVAGRSAISTIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGNVEAGSTVDEEWLLA CCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SNFIIRKVAVLGAGVMGAQIAAHLVNARVPVLLFDLPAKEGPKNGIALKAIENLKKLSP CCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHCCC APFGVKDDAKYLVPANYEDDLDQLAECDVVIEAIAERMDWKHDLYKKVAPHIGPHAIFAS CCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCEEEEC NTSGLSITALSEGFTDELKARFCGVHFFNPPRYMHLVELIPTAHTRGEILDQLETFLTSV CCCCEEEEEECCCCHHHHHHHHHCEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH VGKGVVRAKDTPNFIANRVGIFSILAVITEAAKFGLRFDEVDDLTGVRLGRAKSATFRTA HCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEHH DVVGLDTMAHVIKTMQDNLADDPFFPVYETPAVLAELVKQGALGQKTGAGFYKKEGRAIK HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCEEE VLDPKSGSYVDGGAKADETVARILKRAPAERLKLLRETQHPHAQFLWAVFRDVFHYIGVH EECCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH LESIADNARDVDLAIRWGFGWNEGPFEGWQAAGWKQVAEWVQEDIAAGKALASVPLPSWV HHHHHCCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCHHHHCCCCHHHH LEGAVAEQGGVHTAEGSWSPAAGKFVPRSSLPVYERQVFRAPLLGEAGRDPAKYGRTLFE HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCC TDSVRAWVDDRAGEDDVVIVSFKSKMNTIGPGVIDGLAQAIELAEQDYRAVVIWQPTSLK CCCHHEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEE LGTPGGPFSAGANLEEAMPAFMMGGAKGIEPFVKKFQQGMLRVKYANVPVVSAVSGIALG ECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHCCEEC GGCELMLHSAKRVVHVESYVGLVEVGVGLVPAGGGLKEAALRAAEAATAAGATSELLKFV CCHHHHHHHHHHHEEHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHH AKSFENAAMAKVSTSAHDARAMGYLKPSDTIVFNVFELLDVAKREARALAATGYRPPLRA HHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC TEIPVAGRSAISTIKAQLVNMRDGRFISDHDFLIASRIAEAVCGGNVEAGSTVDEEWLLA CCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH LERRAFVELLGTQKTQERIMGMLQTGKPVRN HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]