| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028544
Identifier: 238028544
GI number: 238028544
Start: 3412016
End: 3413413
Strand: Direct
Name: 238028544
Synonym: bglu_1g30080
Alternate gene names: NA
Gene position: 3412016-3413413 (Clockwise)
Preceding gene: 238028543
Following gene: 238028547
Centisome position: 87.34
GC content: 63.23
Gene sequence:
>1398_bases ATGGCCGGGATCGGTTTCGAACTGCGCAAGATTCTGCGCAAGGACACCTTGTTCGGCGCCGCGCGCGCTTACGCGTATGC CGGGCTGATCAGCTCCGGGCCGCTGATCCTGTCGATCTTCGGCATCCTGCTGATCGGCGTGATGAGCCTGGCGGTGGTCG TGCCGAAGTTCGCGATCGTGCAGTTCCAGGTGTCGGTCACCTACCTGATCGCGCTGAGCCTGATCCTCACCGGGCCCTTG CAGCTCGCGTTCACGCGCTTCATCTCGGATCGCCTGTTCGAGAAGCGTGACGACCTCGTGCTGTCGAACTATAACGGCGT GGTGCTGGTGACCACGCTGGCCGCCGGGCTGTCGGCCAGTCTCGCGATGGCGGCCGGCTTTCGCGGCGAGCCGCTCGCCT ACCGCGTGCTGATGGTGGCGGGCTTCGTGGTGATGAGCAACATCTGGATCTCGGTGATCTTCCTGTCGAGCGTCAAGCAG TACCGGCAGATTCTCTACACCTTCGTGGCGGGCTACGGCTGCACGGTGGCGTTCGCGCTGTCGCTGAACCGGTACGGGCT GGCCGGCCTGCTCGGCGGCTTCGTCGCCGGGCACGTGGTGCTGCTGGGTGGCCTGTCGGGGCTGATCTACCGTGGCTATC GCAGCGGCCGGCTGATCTCGTTCGAGGCGTTCGACCGACGCTTCGCGTATCCGTCGCTCGCGCTCGTCGGGCTGCTGTTC AACCTCGGCGTGTGGATCGACAAGTTCATGTTCTGGTATTCGCCCGACACGGGTTCGCCGGTCATCGGGCCGCTACGCGC GTCGGTGATCTATGACATGCCGGTGTTCATCGCCTACGTGTGCGTGATGCCCGGCATGGCGGCCTTCTTGGTGCGCATCG AAACCGATTTCGTCGAGTACTACGACGCGTTCTACGATGCGGTGCGCAAGGGCTCGACGCTGCGTCACATCAACGACATG CGCGACATGATGGTGAGCAGCGTGCGCTCGGGCCTCTATGAGATCGTCAAGATTCAGGCCGTCCTGTTGCTGCTGATCGT GGCGTTCGGCAGCCACCTGCTGCGGGCGCTGCATGTTTCCACGCTCTACATGCCGCTGCTGACCGTCGACGCGATCGCGG CCAGCCTGCAGGTGGTGCTGCTCGGCCTGCTGAACGTGTTCTTCTACCTCGATGCGCGCCGCACGGTACTACGCCTGTGC GCGGCGTTCGTGCTGCTGAACGGCGTGCTGACGTGGTGCACGCTGCAGATGAGCCCGAACGCGTATGGCTATGGTTTCGC GGTGAGCTTGCTGATACTCGTGGTGATTGCGGTGCTGGTGCTCGACCGGAAGTTTTCGCGGCTCGAATACGATACCTACA TGCTGCATAGTCTCACCGTGTCGCAAAAGAGTGAATGA
Upstream 100 bases:
>100_bases ACACGCAGCTCGCTGCCGCGCCCGATGCGCGGCCGGCGCCGGGCACCGGGCGCGCGTGTCCGGCGCCGCACGGTGCCAAG CCGGCCGGGGAGGCACGCTG
Downstream 100 bases:
>100_bases CAGGCCGGCAGCGGCGGCGTGCCGGTAATTTCGTGTGCAGAGGCCGGATCGCCCCGCCATCCCTGCCCTGAGCCCGGGCA GGCAACGGCTAAAGGAAACG
Product: putative transmembrane protein
Products: NA
Alternate protein names: Inner Membrane Protein; Polysaccharide Synthase Transmembrane Protein; Transmembrane Protein Cog
Number of amino acids: Translated: 465; Mature: 464
Protein sequence:
>465_residues MAGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIVQFQVSVTYLIALSLILTGPL QLAFTRFISDRLFEKRDDLVLSNYNGVVLVTTLAAGLSASLAMAAGFRGEPLAYRVLMVAGFVVMSNIWISVIFLSSVKQ YRQILYTFVAGYGCTVAFALSLNRYGLAGLLGGFVAGHVVLLGGLSGLIYRGYRSGRLISFEAFDRRFAYPSLALVGLLF NLGVWIDKFMFWYSPDTGSPVIGPLRASVIYDMPVFIAYVCVMPGMAAFLVRIETDFVEYYDAFYDAVRKGSTLRHINDM RDMMVSSVRSGLYEIVKIQAVLLLLIVAFGSHLLRALHVSTLYMPLLTVDAIAASLQVVLLGLLNVFFYLDARRTVLRLC AAFVLLNGVLTWCTLQMSPNAYGYGFAVSLLILVVIAVLVLDRKFSRLEYDTYMLHSLTVSQKSE
Sequences:
>Translated_465_residues MAGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIVQFQVSVTYLIALSLILTGPL QLAFTRFISDRLFEKRDDLVLSNYNGVVLVTTLAAGLSASLAMAAGFRGEPLAYRVLMVAGFVVMSNIWISVIFLSSVKQ YRQILYTFVAGYGCTVAFALSLNRYGLAGLLGGFVAGHVVLLGGLSGLIYRGYRSGRLISFEAFDRRFAYPSLALVGLLF NLGVWIDKFMFWYSPDTGSPVIGPLRASVIYDMPVFIAYVCVMPGMAAFLVRIETDFVEYYDAFYDAVRKGSTLRHINDM RDMMVSSVRSGLYEIVKIQAVLLLLIVAFGSHLLRALHVSTLYMPLLTVDAIAASLQVVLLGLLNVFFYLDARRTVLRLC AAFVLLNGVLTWCTLQMSPNAYGYGFAVSLLILVVIAVLVLDRKFSRLEYDTYMLHSLTVSQKSE >Mature_464_residues AGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIVQFQVSVTYLIALSLILTGPLQ LAFTRFISDRLFEKRDDLVLSNYNGVVLVTTLAAGLSASLAMAAGFRGEPLAYRVLMVAGFVVMSNIWISVIFLSSVKQY RQILYTFVAGYGCTVAFALSLNRYGLAGLLGGFVAGHVVLLGGLSGLIYRGYRSGRLISFEAFDRRFAYPSLALVGLLFN LGVWIDKFMFWYSPDTGSPVIGPLRASVIYDMPVFIAYVCVMPGMAAFLVRIETDFVEYYDAFYDAVRKGSTLRHINDMR DMMVSSVRSGLYEIVKIQAVLLLLIVAFGSHLLRALHVSTLYMPLLTVDAIAASLQVVLLGLLNVFFYLDARRTVLRLCA AFVLLNGVLTWCTLQMSPNAYGYGFAVSLLILVVIAVLVLDRKFSRLEYDTYMLHSLTVSQKSE
Specific function: Unknown
COG id: COG4267
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51218; Mature: 51087
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QFQVSVTYLIALSLILTGPLQLAFTRFISDRLFEKRDDLVLSNYNGVVLVTTLAAGLSAS HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHH LAMAAGFRGEPLAYRVLMVAGFVVMSNIWISVIFLSSVKQYRQILYTFVAGYGCTVAFAL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH SLNRYGLAGLLGGFVAGHVVLLGGLSGLIYRGYRSGRLISFEAFDRRFAYPSLALVGLLF HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCHHHHHHHHHH NLGVWIDKFMFWYSPDTGSPVIGPLRASVIYDMPVFIAYVCVMPGMAAFLVRIETDFVEY HHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH YDAFYDAVRKGSTLRHINDMRDMMVSSVRSGLYEIVKIQAVLLLLIVAFGSHLLRALHVS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLYMPLLTVDAIAASLQVVLLGLLNVFFYLDARRTVLRLCAAFVLLNGVLTWCTLQMSPN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC AYGYGFAVSLLILVVIAVLVLDRKFSRLEYDTYMLHSLTVSQKSE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH QFQVSVTYLIALSLILTGPLQLAFTRFISDRLFEKRDDLVLSNYNGVVLVTTLAAGLSAS HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHH LAMAAGFRGEPLAYRVLMVAGFVVMSNIWISVIFLSSVKQYRQILYTFVAGYGCTVAFAL HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH SLNRYGLAGLLGGFVAGHVVLLGGLSGLIYRGYRSGRLISFEAFDRRFAYPSLALVGLLF HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHCCHHHHHHHHHH NLGVWIDKFMFWYSPDTGSPVIGPLRASVIYDMPVFIAYVCVMPGMAAFLVRIETDFVEY HHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH YDAFYDAVRKGSTLRHINDMRDMMVSSVRSGLYEIVKIQAVLLLLIVAFGSHLLRALHVS HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLYMPLLTVDAIAASLQVVLLGLLNVFFYLDARRTVLRLCAAFVLLNGVLTWCTLQMSPN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC AYGYGFAVSLLILVVIAVLVLDRKFSRLEYDTYMLHSLTVSQKSE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA