Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is 238028544

Identifier: 238028544

GI number: 238028544

Start: 3412016

End: 3413413

Strand: Direct

Name: 238028544

Synonym: bglu_1g30080

Alternate gene names: NA

Gene position: 3412016-3413413 (Clockwise)

Preceding gene: 238028543

Following gene: 238028547

Centisome position: 87.34

GC content: 63.23

Gene sequence:

>1398_bases
ATGGCCGGGATCGGTTTCGAACTGCGCAAGATTCTGCGCAAGGACACCTTGTTCGGCGCCGCGCGCGCTTACGCGTATGC
CGGGCTGATCAGCTCCGGGCCGCTGATCCTGTCGATCTTCGGCATCCTGCTGATCGGCGTGATGAGCCTGGCGGTGGTCG
TGCCGAAGTTCGCGATCGTGCAGTTCCAGGTGTCGGTCACCTACCTGATCGCGCTGAGCCTGATCCTCACCGGGCCCTTG
CAGCTCGCGTTCACGCGCTTCATCTCGGATCGCCTGTTCGAGAAGCGTGACGACCTCGTGCTGTCGAACTATAACGGCGT
GGTGCTGGTGACCACGCTGGCCGCCGGGCTGTCGGCCAGTCTCGCGATGGCGGCCGGCTTTCGCGGCGAGCCGCTCGCCT
ACCGCGTGCTGATGGTGGCGGGCTTCGTGGTGATGAGCAACATCTGGATCTCGGTGATCTTCCTGTCGAGCGTCAAGCAG
TACCGGCAGATTCTCTACACCTTCGTGGCGGGCTACGGCTGCACGGTGGCGTTCGCGCTGTCGCTGAACCGGTACGGGCT
GGCCGGCCTGCTCGGCGGCTTCGTCGCCGGGCACGTGGTGCTGCTGGGTGGCCTGTCGGGGCTGATCTACCGTGGCTATC
GCAGCGGCCGGCTGATCTCGTTCGAGGCGTTCGACCGACGCTTCGCGTATCCGTCGCTCGCGCTCGTCGGGCTGCTGTTC
AACCTCGGCGTGTGGATCGACAAGTTCATGTTCTGGTATTCGCCCGACACGGGTTCGCCGGTCATCGGGCCGCTACGCGC
GTCGGTGATCTATGACATGCCGGTGTTCATCGCCTACGTGTGCGTGATGCCCGGCATGGCGGCCTTCTTGGTGCGCATCG
AAACCGATTTCGTCGAGTACTACGACGCGTTCTACGATGCGGTGCGCAAGGGCTCGACGCTGCGTCACATCAACGACATG
CGCGACATGATGGTGAGCAGCGTGCGCTCGGGCCTCTATGAGATCGTCAAGATTCAGGCCGTCCTGTTGCTGCTGATCGT
GGCGTTCGGCAGCCACCTGCTGCGGGCGCTGCATGTTTCCACGCTCTACATGCCGCTGCTGACCGTCGACGCGATCGCGG
CCAGCCTGCAGGTGGTGCTGCTCGGCCTGCTGAACGTGTTCTTCTACCTCGATGCGCGCCGCACGGTACTACGCCTGTGC
GCGGCGTTCGTGCTGCTGAACGGCGTGCTGACGTGGTGCACGCTGCAGATGAGCCCGAACGCGTATGGCTATGGTTTCGC
GGTGAGCTTGCTGATACTCGTGGTGATTGCGGTGCTGGTGCTCGACCGGAAGTTTTCGCGGCTCGAATACGATACCTACA
TGCTGCATAGTCTCACCGTGTCGCAAAAGAGTGAATGA

Upstream 100 bases:

>100_bases
ACACGCAGCTCGCTGCCGCGCCCGATGCGCGGCCGGCGCCGGGCACCGGGCGCGCGTGTCCGGCGCCGCACGGTGCCAAG
CCGGCCGGGGAGGCACGCTG

Downstream 100 bases:

>100_bases
CAGGCCGGCAGCGGCGGCGTGCCGGTAATTTCGTGTGCAGAGGCCGGATCGCCCCGCCATCCCTGCCCTGAGCCCGGGCA
GGCAACGGCTAAAGGAAACG

Product: putative transmembrane protein

Products: NA

Alternate protein names: Inner Membrane Protein; Polysaccharide Synthase Transmembrane Protein; Transmembrane Protein Cog

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MAGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIVQFQVSVTYLIALSLILTGPL
QLAFTRFISDRLFEKRDDLVLSNYNGVVLVTTLAAGLSASLAMAAGFRGEPLAYRVLMVAGFVVMSNIWISVIFLSSVKQ
YRQILYTFVAGYGCTVAFALSLNRYGLAGLLGGFVAGHVVLLGGLSGLIYRGYRSGRLISFEAFDRRFAYPSLALVGLLF
NLGVWIDKFMFWYSPDTGSPVIGPLRASVIYDMPVFIAYVCVMPGMAAFLVRIETDFVEYYDAFYDAVRKGSTLRHINDM
RDMMVSSVRSGLYEIVKIQAVLLLLIVAFGSHLLRALHVSTLYMPLLTVDAIAASLQVVLLGLLNVFFYLDARRTVLRLC
AAFVLLNGVLTWCTLQMSPNAYGYGFAVSLLILVVIAVLVLDRKFSRLEYDTYMLHSLTVSQKSE

Sequences:

>Translated_465_residues
MAGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIVQFQVSVTYLIALSLILTGPL
QLAFTRFISDRLFEKRDDLVLSNYNGVVLVTTLAAGLSASLAMAAGFRGEPLAYRVLMVAGFVVMSNIWISVIFLSSVKQ
YRQILYTFVAGYGCTVAFALSLNRYGLAGLLGGFVAGHVVLLGGLSGLIYRGYRSGRLISFEAFDRRFAYPSLALVGLLF
NLGVWIDKFMFWYSPDTGSPVIGPLRASVIYDMPVFIAYVCVMPGMAAFLVRIETDFVEYYDAFYDAVRKGSTLRHINDM
RDMMVSSVRSGLYEIVKIQAVLLLLIVAFGSHLLRALHVSTLYMPLLTVDAIAASLQVVLLGLLNVFFYLDARRTVLRLC
AAFVLLNGVLTWCTLQMSPNAYGYGFAVSLLILVVIAVLVLDRKFSRLEYDTYMLHSLTVSQKSE
>Mature_464_residues
AGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIVQFQVSVTYLIALSLILTGPLQ
LAFTRFISDRLFEKRDDLVLSNYNGVVLVTTLAAGLSASLAMAAGFRGEPLAYRVLMVAGFVVMSNIWISVIFLSSVKQY
RQILYTFVAGYGCTVAFALSLNRYGLAGLLGGFVAGHVVLLGGLSGLIYRGYRSGRLISFEAFDRRFAYPSLALVGLLFN
LGVWIDKFMFWYSPDTGSPVIGPLRASVIYDMPVFIAYVCVMPGMAAFLVRIETDFVEYYDAFYDAVRKGSTLRHINDMR
DMMVSSVRSGLYEIVKIQAVLLLLIVAFGSHLLRALHVSTLYMPLLTVDAIAASLQVVLLGLLNVFFYLDARRTVLRLCA
AFVLLNGVLTWCTLQMSPNAYGYGFAVSLLILVVIAVLVLDRKFSRLEYDTYMLHSLTVSQKSE

Specific function: Unknown

COG id: COG4267

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51218; Mature: 51087

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AGIGFELRKILRKDTLFGAARAYAYAGLISSGPLILSIFGILLIGVMSLAVVVPKFAIV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH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CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA