| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028547
Identifier: 238028547
GI number: 238028547
Start: 3416438
End: 3417175
Strand: Direct
Name: 238028547
Synonym: bglu_1g30110
Alternate gene names: NA
Gene position: 3416438-3417175 (Clockwise)
Preceding gene: 238028544
Following gene: 238028552
Centisome position: 87.46
GC content: 72.63
Gene sequence:
>738_bases ATGAGTGAAAAACTGTTCGTTGCCGGCGCGACCGGCGTGATCGGCCGCGTGCTGGTGCCGCTGCTGGTCGAAGCCGGCTA TCGGGTCTATGGCGCCACGCGCCGTGCCGAGCGCGCGGCGCTGCTCACCGGCCTGGGCGCCGAGCCGGTGGTGGTCGACG TGTTCAACGCCGACCGGCTCACGAGCGAGCTGCGCCGCATCGCGCCGGCCGCGGTGATCCACCAGTTGACCGACCTGCCG GCCGGCCTCGATCCCTCGCAGATGGCGCAGGCCATCGTCAACAACGCGCGGATTCGCGGCGAGGGCACGCGCAATCTCGT GCAGGCGTCGCTGGCCGCGGGCTGCCGGCGCATGATCGCGCAGAGCATCGCCTGGGCGTTCGCGTCGCTGGGCGAGAAGC CCTACGGCGAGGCGCAGCCGCTCGACCTGGCGGCCGAGGGCGCCCGCAAGATCTCGGTGGGCGGGGTGGCCGCGCTCGAG CAGGCCGTGTTCGACACGCCGGAGCTGCAAGGCGCGGTGCTGCGCTACGGCCGCCTCTACGGCCCGCAAACGGGCGCCGA CGCGCCGCCCGCGGCGCCGGCGCTGCATGTCAACGACGCGGCGCGCGCGGCGCTGCTGGTGCTGCAGAAGAAGGCCACCG GCGTGTTCAATATCGTCGACGACAACGGCGAGGTATCCAACCAGAAGGCCCGGCGCGAACTGGGCTGGGTGCCGGGCGAA GCGCACGTGCAGGCCTGA
Upstream 100 bases:
>100_bases TAGGCTGTCCCGTCATGCGCCGCTCGCCGTCCGGCAAGGGCCGACGCGACGCGGCCCGGTCGAAGCCACCGAAACCATCA AAGAACCCCGGAGCCCTATC
Downstream 100 bases:
>100_bases GGCCGGGGCGCGGCGGGCCGGCCCGCCCGATTGCTCAGCCGGCCGGAAACGCCGCCGTGACGAGCAGCCCGCGCCCGCCC GGCCCGTCGTCGAGCCGCAG
Product: dTDP-glucose 4,6-dehydratase
Products: NA
Alternate protein names: DTDP-Glucose 4 6-Dehydratase; Dehydrogenase; Epimerase/Dehydratase; Nucleoside-Diphosphate-Sugar Epimerase; Carbon-Nitrogen Family Hydrolase; Steroid Protein ; NAD Dependent Epimerase/Dehydratase Family; Glucose Epimerase Protein
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MSEKLFVAGATGVIGRVLVPLLVEAGYRVYGATRRAERAALLTGLGAEPVVVDVFNADRLTSELRRIAPAAVIHQLTDLP AGLDPSQMAQAIVNNARIRGEGTRNLVQASLAAGCRRMIAQSIAWAFASLGEKPYGEAQPLDLAAEGARKISVGGVAALE QAVFDTPELQGAVLRYGRLYGPQTGADAPPAAPALHVNDAARAALLVLQKKATGVFNIVDDNGEVSNQKARRELGWVPGE AHVQA
Sequences:
>Translated_245_residues MSEKLFVAGATGVIGRVLVPLLVEAGYRVYGATRRAERAALLTGLGAEPVVVDVFNADRLTSELRRIAPAAVIHQLTDLP AGLDPSQMAQAIVNNARIRGEGTRNLVQASLAAGCRRMIAQSIAWAFASLGEKPYGEAQPLDLAAEGARKISVGGVAALE QAVFDTPELQGAVLRYGRLYGPQTGADAPPAAPALHVNDAARAALLVLQKKATGVFNIVDDNGEVSNQKARRELGWVPGE AHVQA >Mature_244_residues SEKLFVAGATGVIGRVLVPLLVEAGYRVYGATRRAERAALLTGLGAEPVVVDVFNADRLTSELRRIAPAAVIHQLTDLPA GLDPSQMAQAIVNNARIRGEGTRNLVQASLAAGCRRMIAQSIAWAFASLGEKPYGEAQPLDLAAEGARKISVGGVAALEQ AVFDTPELQGAVLRYGRLYGPQTGADAPPAAPALHVNDAARAALLVLQKKATGVFNIVDDNGEVSNQKARRELGWVPGEA HVQA
Specific function: Unknown
COG id: COG0451
COG function: function code MG; Nucleoside-diphosphate-sugar epimerases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25702; Mature: 25571
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKLFVAGATGVIGRVLVPLLVEAGYRVYGATRRAERAALLTGLGAEPVVVDVFNADRL CCCCEEEECCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCEEEEECCHHHH TSELRRIAPAAVIHQLTDLPAGLDPSQMAQAIVNNARIRGEGTRNLVQASLAAGCRRMIA HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHH QSIAWAFASLGEKPYGEAQPLDLAAEGARKISVGGVAALEQAVFDTPELQGAVLRYGRLY HHHHHHHHHHCCCCCCCCCCCCHHHCCCCEEECCHHHHHHHHHCCCCCHHHHHHHHHHHC GPQTGADAPPAAPALHVNDAARAALLVLQKKATGVFNIVDDNGEVSNQKARRELGWVPGE CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCCC AHVQA CCCCC >Mature Secondary Structure SEKLFVAGATGVIGRVLVPLLVEAGYRVYGATRRAERAALLTGLGAEPVVVDVFNADRL CCCEEEECCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCEEEEECCHHHH TSELRRIAPAAVIHQLTDLPAGLDPSQMAQAIVNNARIRGEGTRNLVQASLAAGCRRMIA HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHH QSIAWAFASLGEKPYGEAQPLDLAAEGARKISVGGVAALEQAVFDTPELQGAVLRYGRLY HHHHHHHHHHCCCCCCCCCCCCHHHCCCCEEECCHHHHHHHHHCCCCCHHHHHHHHHHHC GPQTGADAPPAAPALHVNDAARAALLVLQKKATGVFNIVDDNGEVSNQKARRELGWVPGE CCCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCCC AHVQA CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA