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The map label for this gene is lpsB [H]

Identifier: 238028543

GI number: 238028543

Start: 3410394

End: 3412016

Strand: Direct

Name: lpsB [H]

Synonym: bglu_1g30070

Alternate gene names: 238028543

Gene position: 3410394-3412016 (Clockwise)

Preceding gene: 238028542

Following gene: 238028544

Centisome position: 87.3

GC content: 70.49

Gene sequence:

>1623_bases
ATGAACCCGTCCCTAAACCGGCGCGCCGCCGATGCCGATGTCTGCCTGCTGCTGGAGGGCACCTTCCCGTTCGTGCGCGG
CGGCGTGTCGAGCTGGGTCAACGAGATGCTGCGCGCGTACCCGCATCTGCGCTTTGCCGTGGTGTTCATCGGCAGCCGCG
AGGAGGACTACCGGGACGCCGCCTACGCGCTGCCCGACAACGTCGTGCACTTCGAGGCGCATTACCTGTACGCGACGGCC
GGCAGCGTCGACGAGCGGCCGCGCGAGGTCGCGGGCGACCCGGCCGCGTTCGCGCAGTCGGCGCGGCTGCATGAGGCGCT
GCGCGGCGCGAGCGGCGCGCAGCGCACGGGCGGCGACAGCGTGGCCGCCCTGATGGCGCAGATGGCACCCACGCTCGGCG
CGCACGGCACGCTCAACGAACAGCAGTTCTCCACCAGCCGCGCCGCCTGGGACTTCATCGTCGATCAATACGAGCGGCAT
TGCACCGACCCGTCGTTTACCGATTACTTCTGGACCGTGCGGATCATGCACAAGCCGCTGTGGCAGCTGGCGAACGTGGC
CGAGCAGCTGCCGCCGGCGCGCCTCTATCACACGGTGTCCACCGGTTATGCCGGCTTTCTCGGCACGCTGCTGCACTACC
GCAGCGGGCGGCCGCTGCTGGTGTCCGAGCACGGCATCTATACGAAGGAACGCAAGATCGACTTGCTGCAGAGCCAGTGG
ATTCGCGACAATCGCGGCGCGTTCGAGCGCGACATCTCGCGCATCAGCTACTTCCGCGAGCTGTGGGTGCGCTTCTTCGA
GGCGCTCGGCCGGCTCGCGTACGAGGCCGCCGACGAGATCGTCGCGCTTTACGAGGCGAACCGGCTGCGCCAGGTGGCCG
ACGGCGCGCCCGCCGCGAAAACCCGCAGCATTCCCAATGGTGTCGATGTGGACGCGCTGGCGCCGCTGGTCGCGCAGCGC
ACCGACGGACCACGTCGCGTGGTCGCGCTGATCGGCCGCGTGGTGCCGATCAAGGACATCAAGACGTTCATTCGCGCGAT
GTTCGTCGCGTCGCACAGCAGGCCGGACCTCGAAGGCTGGATTGTCGGCCCGGAGGAGGAGGATCCGGCCTACGCGCTCG
AATGCCGCGCGCTCGTCGAGAGCCTGGGCCTGGCCTCGCGCGTGAAGTTCCTCGGCTTCCAGCGAATCGATGCGGTGCTG
CCGAAGATCGACCTGATCGCGCTGTCGTCGATCAGCGAAGCCTTGCCCCTGGTCGTGCTGGAGGGCTTCGCGGCCGGGGT
GCCCGCGATCACCACCGACGTGGGCTCGTGCCGCCAGTTGATCGAGGGCTACGGCGACGAGGATCGCGCGCTCGGCAGCG
CTGGCGCGGTCGTGCCGATCGCCGACCCGGCGCGATTCGCGCGGGCGGCGCTCGCGCTGCTCGACGACGACACGCGCTGG
CGCGTCGCGCAGCAGGCCGGCCTCGCGCGCGTGCGCCGCTACTACACCAAGGCGCAGATGACGGACCGCTACGCCGCGCT
CTACACGCAGCTCGCTGCCGCGCCCGATGCGCGGCCGGCGCCGGGCACCGGGCGCGCGTGTCCGGCGCCGCACGGTGCCA
AGCCGGCCGGGGAGGCACGCTGA

Upstream 100 bases:

>100_bases
TCCTGCGCGGCGATTACCTGCGCGTGCGCGAGTTGCTGGCGTCGCACGGCAACGCCGCGGTGCTGCCGACGCTCAAACCG
ATTGTCACCTACTGGTCCCG

Downstream 100 bases:

>100_bases
TGGCCGGGATCGGTTTCGAACTGCGCAAGATTCTGCGCAAGGACACCTTGTTCGGCGCCGCGCGCGCTTACGCGTATGCC
GGGCTGATCAGCTCCGGGCC

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MNPSLNRRAADADVCLLLEGTFPFVRGGVSSWVNEMLRAYPHLRFAVVFIGSREEDYRDAAYALPDNVVHFEAHYLYATA
GSVDERPREVAGDPAAFAQSARLHEALRGASGAQRTGGDSVAALMAQMAPTLGAHGTLNEQQFSTSRAAWDFIVDQYERH
CTDPSFTDYFWTVRIMHKPLWQLANVAEQLPPARLYHTVSTGYAGFLGTLLHYRSGRPLLVSEHGIYTKERKIDLLQSQW
IRDNRGAFERDISRISYFRELWVRFFEALGRLAYEAADEIVALYEANRLRQVADGAPAAKTRSIPNGVDVDALAPLVAQR
TDGPRRVVALIGRVVPIKDIKTFIRAMFVASHSRPDLEGWIVGPEEEDPAYALECRALVESLGLASRVKFLGFQRIDAVL
PKIDLIALSSISEALPLVVLEGFAAGVPAITTDVGSCRQLIEGYGDEDRALGSAGAVVPIADPARFARAALALLDDDTRW
RVAQQAGLARVRRYYTKAQMTDRYAALYTQLAAAPDARPAPGTGRACPAPHGAKPAGEAR

Sequences:

>Translated_540_residues
MNPSLNRRAADADVCLLLEGTFPFVRGGVSSWVNEMLRAYPHLRFAVVFIGSREEDYRDAAYALPDNVVHFEAHYLYATA
GSVDERPREVAGDPAAFAQSARLHEALRGASGAQRTGGDSVAALMAQMAPTLGAHGTLNEQQFSTSRAAWDFIVDQYERH
CTDPSFTDYFWTVRIMHKPLWQLANVAEQLPPARLYHTVSTGYAGFLGTLLHYRSGRPLLVSEHGIYTKERKIDLLQSQW
IRDNRGAFERDISRISYFRELWVRFFEALGRLAYEAADEIVALYEANRLRQVADGAPAAKTRSIPNGVDVDALAPLVAQR
TDGPRRVVALIGRVVPIKDIKTFIRAMFVASHSRPDLEGWIVGPEEEDPAYALECRALVESLGLASRVKFLGFQRIDAVL
PKIDLIALSSISEALPLVVLEGFAAGVPAITTDVGSCRQLIEGYGDEDRALGSAGAVVPIADPARFARAALALLDDDTRW
RVAQQAGLARVRRYYTKAQMTDRYAALYTQLAAAPDARPAPGTGRACPAPHGAKPAGEAR
>Mature_540_residues
MNPSLNRRAADADVCLLLEGTFPFVRGGVSSWVNEMLRAYPHLRFAVVFIGSREEDYRDAAYALPDNVVHFEAHYLYATA
GSVDERPREVAGDPAAFAQSARLHEALRGASGAQRTGGDSVAALMAQMAPTLGAHGTLNEQQFSTSRAAWDFIVDQYERH
CTDPSFTDYFWTVRIMHKPLWQLANVAEQLPPARLYHTVSTGYAGFLGTLLHYRSGRPLLVSEHGIYTKERKIDLLQSQW
IRDNRGAFERDISRISYFRELWVRFFEALGRLAYEAADEIVALYEANRLRQVADGAPAAKTRSIPNGVDVDALAPLVAQR
TDGPRRVVALIGRVVPIKDIKTFIRAMFVASHSRPDLEGWIVGPEEEDPAYALECRALVESLGLASRVKFLGFQRIDAVL
PKIDLIALSSISEALPLVVLEGFAAGVPAITTDVGSCRQLIEGYGDEDRALGSAGAVVPIADPARFARAALALLDDDTRW
RVAQQAGLARVRRYYTKAQMTDRYAALYTQLAAAPDARPAPGTGRACPAPHGAKPAGEAR

Specific function: Acts at transfer of mannose group to a 3-deoxy-D-mono octulonic acid (KDO) via an alpha-1,5 linkage [H]

COG id: COG0438

COG function: function code M; Glycosyltransferase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 59290; Mature: 59290

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPSLNRRAADADVCLLLEGTFPFVRGGVSSWVNEMLRAYPHLRFAVVFIGSREEDYRDA
CCCCCCCCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
AYALPDNVVHFEAHYLYATAGSVDERPREVAGDPAAFAQSARLHEALRGASGAQRTGGDS
HHCCCCCEEEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHH
VAALMAQMAPTLGAHGTLNEQQFSTSRAAWDFIVDQYERHCTDPSFTDYFWTVRIMHKPL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
WQLANVAEQLPPARLYHTVSTGYAGFLGTLLHYRSGRPLLVSEHGIYTKERKIDLLQSQW
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
IRDNRGAFERDISRISYFRELWVRFFEALGRLAYEAADEIVALYEANRLRQVADGAPAAK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
TRSIPNGVDVDALAPLVAQRTDGPRRVVALIGRVVPIKDIKTFIRAMFVASHSRPDLEGW
HCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEE
IVGPEEEDPAYALECRALVESLGLASRVKFLGFQRIDAVLPKIDLIALSSISEALPLVVL
EECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
EGFAAGVPAITTDVGSCRQLIEGYGDEDRALGSAGAVVPIADPARFARAALALLDDDTRW
HHHHCCCCHHHCCHHHHHHHHHCCCCCHHHCCCCCCEEECCCHHHHHHHHHHHHCCCHHH
RVAQQAGLARVRRYYTKAQMTDRYAALYTQLAAAPDARPAPGTGRACPAPHGAKPAGEAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNPSLNRRAADADVCLLLEGTFPFVRGGVSSWVNEMLRAYPHLRFAVVFIGSREEDYRDA
CCCCCCCCCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHH
AYALPDNVVHFEAHYLYATAGSVDERPREVAGDPAAFAQSARLHEALRGASGAQRTGGDS
HHCCCCCEEEEEEEEEEEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHH
VAALMAQMAPTLGAHGTLNEQQFSTSRAAWDFIVDQYERHCTDPSFTDYFWTVRIMHKPL
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
WQLANVAEQLPPARLYHTVSTGYAGFLGTLLHYRSGRPLLVSEHGIYTKERKIDLLQSQW
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHH
IRDNRGAFERDISRISYFRELWVRFFEALGRLAYEAADEIVALYEANRLRQVADGAPAAK
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
TRSIPNGVDVDALAPLVAQRTDGPRRVVALIGRVVPIKDIKTFIRAMFVASHSRPDLEGW
HCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEE
IVGPEEEDPAYALECRALVESLGLASRVKFLGFQRIDAVLPKIDLIALSSISEALPLVVL
EECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
EGFAAGVPAITTDVGSCRQLIEGYGDEDRALGSAGAVVPIADPARFARAALALLDDDTRW
HHHHCCCCHHHCCHHHHHHHHHCCCCCHHHCCCCCCEEECCCHHHHHHHHHHHHCCCHHH
RVAQQAGLARVRRYYTKAQMTDRYAALYTQLAAAPDARPAPGTGRACPAPHGAKPAGEAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]