| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027921
Identifier: 238027921
GI number: 238027921
Start: 2597256
End: 2597972
Strand: Direct
Name: 238027921
Synonym: bglu_1g23630
Alternate gene names: NA
Gene position: 2597256-2597972 (Clockwise)
Preceding gene: 238027913
Following gene: 238027922
Centisome position: 66.49
GC content: 71.83
Gene sequence:
>717_bases ATGAAATCTTCCAGCGGCCGCGCGCCGAGCGCTGCGACCCTCGTTGCGACCGCCCTCCTCGGTCTCGCGCTGGCGCTTCC GGCCTTTGCCCAGAAAGCACCCGCCGCCACCGACGGCACGCCGGAGATCGACGCGTCGATCACGAACCGCAACTGGTCGG CGGCGCTGGCACAGCTCGACGCGCGCATCGCGACGAACCCGCGCGACGTGCAGGCGCAGTTCAAGCGCGGCACGGTGCTG GCCCGGCTGAACCGCGACGACGACGCGATCCAACAGTTCGTCGCGCTCACGCAGGCCTACCCCGAGTTGCCCGAACCGTA CAACAACCTCGCCGCGCTGTACGCGAAGCACGGCCGCTACGACGAGGCGCGCGCCGCGCTCGTCACCGCGATCAAGGCGA ATCCCGACTACGGTCTCGCCTACGAGAATCTGGGCGACCTGTACCTGCGGCTCGCGGCGGCGTCATACCAGCGCGCGCAG TCGCTCGGCCAGGCGAGCGGCCCGACCGCGCAGCGGCTTGCCGACCTGCAGCGCATCGTTTCGCCGCCGGCCGACCAACG CGCCGCGGCTGCCGCGCCGGCGAGCCGGACCCGCGCGCTGACGGACCGGGCGGCCTCGAACCTGTCCACCACCACGCTGC CGCTGTCGCCCTCGTTCCAGTTCGGCATCTCGGACGGCTCGCTCGCGGTGCCGCCCTACCTGGCGCCATCGAACTGA
Upstream 100 bases:
>100_bases AGCGGTAACGGCGCGAGAGGCAAAAGACAGTCCGCAGCTCGCCGGAATGCGCGGACGATTTGCTAGAATGGCTCGGAGTA TAACATTGCGATTTGAGCCT
Downstream 100 bases:
>100_bases CGCGGGAATCGGACGCGCGGCAGGGCTTCCCAATCCATTCACTCAACCAGAGGATCGTCATGAAACGTCTGTTGTTGGCG CTCGGCAGCGCCGCCTTCGT
Product: Tetratricopeptide repeat-containing protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Family Protein; Signal Peptide Protein; Tpr Repeat-Containing Protein; Tetratricopeptide TPR_1 Repeat-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Protein; TPR Domain-Containing Protein; Exported Protein
Number of amino acids: Translated: 238; Mature: 238
Protein sequence:
>238_residues MKSSSGRAPSAATLVATALLGLALALPAFAQKAPAATDGTPEIDASITNRNWSAALAQLDARIATNPRDVQAQFKRGTVL ARLNRDDDAIQQFVALTQAYPELPEPYNNLAALYAKHGRYDEARAALVTAIKANPDYGLAYENLGDLYLRLAAASYQRAQ SLGQASGPTAQRLADLQRIVSPPADQRAAAAAPASRTRALTDRAASNLSTTTLPLSPSFQFGISDGSLAVPPYLAPSN
Sequences:
>Translated_238_residues MKSSSGRAPSAATLVATALLGLALALPAFAQKAPAATDGTPEIDASITNRNWSAALAQLDARIATNPRDVQAQFKRGTVL ARLNRDDDAIQQFVALTQAYPELPEPYNNLAALYAKHGRYDEARAALVTAIKANPDYGLAYENLGDLYLRLAAASYQRAQ SLGQASGPTAQRLADLQRIVSPPADQRAAAAAPASRTRALTDRAASNLSTTTLPLSPSFQFGISDGSLAVPPYLAPSN >Mature_238_residues MKSSSGRAPSAATLVATALLGLALALPAFAQKAPAATDGTPEIDASITNRNWSAALAQLDARIATNPRDVQAQFKRGTVL ARLNRDDDAIQQFVALTQAYPELPEPYNNLAALYAKHGRYDEARAALVTAIKANPDYGLAYENLGDLYLRLAAASYQRAQ SLGQASGPTAQRLADLQRIVSPPADQRAAAAAPASRTRALTDRAASNLSTTTLPLSPSFQFGISDGSLAVPPYLAPSN
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25017; Mature: 25017
Theoretical pI: Translated: 9.51; Mature: 9.51
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSSSGRAPSAATLVATALLGLALALPAFAQKAPAATDGTPEIDASITNRNWSAALAQLD CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHH ARIATNPRDVQAQFKRGTVLARLNRDDDAIQQFVALTQAYPELPEPYNNLAALYAKHGRY HHHCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC DEARAALVTAIKANPDYGLAYENLGDLYLRLAAASYQRAQSLGQASGPTAQRLADLQRIV HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH SPPADQRAAAAAPASRTRALTDRAASNLSTTTLPLSPSFQFGISDGSLAVPPYLAPSN CCCCCHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCCCEECCCCCCCCC >Mature Secondary Structure MKSSSGRAPSAATLVATALLGLALALPAFAQKAPAATDGTPEIDASITNRNWSAALAQLD CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHH ARIATNPRDVQAQFKRGTVLARLNRDDDAIQQFVALTQAYPELPEPYNNLAALYAKHGRY HHHCCCCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC DEARAALVTAIKANPDYGLAYENLGDLYLRLAAASYQRAQSLGQASGPTAQRLADLQRIV HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH SPPADQRAAAAAPASRTRALTDRAASNLSTTTLPLSPSFQFGISDGSLAVPPYLAPSN CCCCCHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCEECCCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA