Click here to switch to the map view.

The map label for this gene is pecT [H]

Identifier: 238027852

GI number: 238027852

Start: 2492104

End: 2493009

Strand: Reverse

Name: pecT [H]

Synonym: bglu_1g22830

Alternate gene names: 238027852

Gene position: 2493009-2492104 (Counterclockwise)

Preceding gene: 238027854

Following gene: 238027841

Centisome position: 63.82

GC content: 74.17

Gene sequence:

>906_bases
ATGGCGGCCCGTAAAAATCTCGACATGGACGTGCTGCGCACCTTCGTCACCGGCTTCGAGCTGGGCAGCTTCGCGCGCGC
GGCCGAGCGTCTCGGGCGCTCGCAGTCGGCCGTCAGCACCCAGTTGCGCCGGCTCGAGGAGCAGGTCGGCCAGCCGCTCG
TGCGCAAGTCGGGGCGCGGGCTGGCGCTGACCACGGCGGGCGAGAGCCTGCTCGGCTATGCCAAGCGGCTGCTCGCGCTC
AACGACGAGGCGGTCGAGAGCCTGCGCGGCGCCGATGTCGCCGGCTGGGCGCGGCTCGGACTGCCGCAGGACTTCGCCGA
GGGCTGGCTGCCGGCGCTGCTGCAGCGCTTCGCGCGCGCTCACCCGAAGGTGCGGGTGGAAGTGCAGGTCGACCGTGCCG
TGCCGCTCGTCGAGCGCACCTTGCGCGGCGAACTCGACATCGCGCTGGTGTGGGGCGACGCGGCAGGCATGCCGCGCGGC
GAGAAGGTGGCCGACGTGCCGCTGCAATGGATCGGCGCGCCCGGCTGGCCCGGCGTGGCGAGTCTCGGCCCCGAGCCGCT
GCCGTTCGCGGCGTTCGCGCCGCCGTGCGGTTTTCGCTCGGCGGCGGTCGGCGCGCTCGATGCGGCCGGGCTGCCGTGGC
GGCTGGTGTTCACCAGCCCGAGCCTGTCGGGGCTCTGGGCCGCCGCCGAGGGCGGCCTCGGCATCACGGCGCGCACTGCC
ATCCATTTGCCGAAGACGCTGGCCGTGCTCGATCCGGCCGCCACCGGGCTGCCGCGGCTGGCATCGATCCCGCTCTTGCT
GTGCCGGGCCGAGGCCGACCCGCCGCCCGCCGTCGAACGTCTCACGGCGATCCTGCTCGAGATGGTCCACGACGAGATCG
GCATGGCCGCCGATCGTGCCGCCTGA

Upstream 100 bases:

>100_bases
CGGCCGGCTTCGGTGCCGTGCTTGACATCGCTACGATAGGCTTCAACAATCATTCTGAGAATTTGAAATTCAAGAATCCA
TACATCAAAAAATTCGAATG

Downstream 100 bases:

>100_bases
GGGCGGGAATCATTCGACTCCGAGCAAGCGCGGAGTCCGGATTCTCAAAGTTTCGGAAGCAGCGCGCCTGCCTAGGCCAG
GGTCACGGGCCCGACTCAGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MAARKNLDMDVLRTFVTGFELGSFARAAERLGRSQSAVSTQLRRLEEQVGQPLVRKSGRGLALTTAGESLLGYAKRLLAL
NDEAVESLRGADVAGWARLGLPQDFAEGWLPALLQRFARAHPKVRVEVQVDRAVPLVERTLRGELDIALVWGDAAGMPRG
EKVADVPLQWIGAPGWPGVASLGPEPLPFAAFAPPCGFRSAAVGALDAAGLPWRLVFTSPSLSGLWAAAEGGLGITARTA
IHLPKTLAVLDPAATGLPRLASIPLLLCRAEADPPPAVERLTAILLEMVHDEIGMAADRAA

Sequences:

>Translated_301_residues
MAARKNLDMDVLRTFVTGFELGSFARAAERLGRSQSAVSTQLRRLEEQVGQPLVRKSGRGLALTTAGESLLGYAKRLLAL
NDEAVESLRGADVAGWARLGLPQDFAEGWLPALLQRFARAHPKVRVEVQVDRAVPLVERTLRGELDIALVWGDAAGMPRG
EKVADVPLQWIGAPGWPGVASLGPEPLPFAAFAPPCGFRSAAVGALDAAGLPWRLVFTSPSLSGLWAAAEGGLGITARTA
IHLPKTLAVLDPAATGLPRLASIPLLLCRAEADPPPAVERLTAILLEMVHDEIGMAADRAA
>Mature_300_residues
AARKNLDMDVLRTFVTGFELGSFARAAERLGRSQSAVSTQLRRLEEQVGQPLVRKSGRGLALTTAGESLLGYAKRLLALN
DEAVESLRGADVAGWARLGLPQDFAEGWLPALLQRFARAHPKVRVEVQVDRAVPLVERTLRGELDIALVWGDAAGMPRGE
KVADVPLQWIGAPGWPGVASLGPEPLPFAAFAPPCGFRSAAVGALDAAGLPWRLVFTSPSLSGLWAAAEGGLGITARTAI
HLPKTLAVLDPAATGLPRLASIPLLLCRAEADPPPAVERLTAILLEMVHDEIGMAADRAA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=263, Percent_Identity=36.1216730038023, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1787806, Length=146, Percent_Identity=31.5068493150685, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789173, Length=145, Percent_Identity=34.4827586206897, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=145, Percent_Identity=31.7241379310345, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082132, Length=236, Percent_Identity=25.4237288135593, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787601, Length=179, Percent_Identity=27.3743016759777, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI157672245, Length=145, Percent_Identity=33.1034482758621, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994962, Length=148, Percent_Identity=31.7567567567568, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787589, Length=177, Percent_Identity=31.0734463276836, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788887, Length=147, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788748, Length=148, Percent_Identity=30.4054054054054, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787879, Length=211, Percent_Identity=29.8578199052133, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31841; Mature: 31710

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARKNLDMDVLRTFVTGFELGSFARAAERLGRSQSAVSTQLRRLEEQVGQPLVRKSGRG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCC
LALTTAGESLLGYAKRLLALNDEAVESLRGADVAGWARLGLPQDFAEGWLPALLQRFARA
EEEEECCHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHC
HPKVRVEVQVDRAVPLVERTLRGELDIALVWGDAAGMPRGEKVADVPLQWIGAPGWPGVA
CCCEEEEEEECCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCHHCCCHHHCCCCCCCCHH
SLGPEPLPFAAFAPPCGFRSAAVGALDAAGLPWRLVFTSPSLSGLWAAAEGGLGITARTA
HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCCEEEHHH
IHLPKTLAVLDPAATGLPRLASIPLLLCRAEADPPPAVERLTAILLEMVHDEIGMAADRA
HHCCHHHHHCCCHHCCCCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHCCC
A
C
>Mature Secondary Structure 
AARKNLDMDVLRTFVTGFELGSFARAAERLGRSQSAVSTQLRRLEEQVGQPLVRKSGRG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCC
LALTTAGESLLGYAKRLLALNDEAVESLRGADVAGWARLGLPQDFAEGWLPALLQRFARA
EEEEECCHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHC
HPKVRVEVQVDRAVPLVERTLRGELDIALVWGDAAGMPRGEKVADVPLQWIGAPGWPGVA
CCCEEEEEEECCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCHHCCCHHHCCCCCCCCHH
SLGPEPLPFAAFAPPCGFRSAAVGALDAAGLPWRLVFTSPSLSGLWAAAEGGLGITARTA
HCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCCEEEHHH
IHLPKTLAVLDPAATGLPRLASIPLLLCRAEADPPPAVERLTAILLEMVHDEIGMAADRA
HHCCHHHHHCCCHHCCCCHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]