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The map label for this gene is ydhC [H]

Identifier: 238027841

GI number: 238027841

Start: 2481563

End: 2482225

Strand: Reverse

Name: ydhC [H]

Synonym: bglu_1g22720

Alternate gene names: 238027841

Gene position: 2482225-2481563 (Counterclockwise)

Preceding gene: 238027852

Following gene: 238027840

Centisome position: 63.54

GC content: 58.67

Gene sequence:

>663_bases
ATGGAAGAAAAAACAAATTCAGACGCCGACCACGCGTATGACGAAATTCGAACACGAATTCTCGACGGACGCCTGGAGCC
AGGCCAGAAAATCTCACATCGCGGGTTGGCAAGCAAACTCGGAATCGGGCAGATGCCGGTGCGCAGCGCGCTGCAGCGGC
TGGCCGCCGAGAATCTCGTCACCGTGTTCGACAAGCGCGGCACCTACGTCAACGATCCGACGCGCGACGATCTCCAGCAG
ATCTTCGAGGTCCGGCTCGCGCTGGAGAGCACGGCGGCCTATCTCGCGGCGTGCCGCGGGCCGACGCCCGCAATGGCGGC
CTCGGTGGAGCGCATGGAGCGGCTGATCGAGAGCGGCGAGACCGACATCATGGCCGAGCAGCGCATCGGCTGGGTTTTTC
ATCAGGAAATGTTTTTGGCCGCGAGAAACGAGCGGCTGCATAATTTTTATAAATTACTGAGAGCACAGACGCTTGCATTG
AATGAATTGCCGCGGCAGGACATCGAGACGGTCCGGCGCGGCACCATGGAACATCTGGCGATTTATTCCGCGATCCGCGA
CGGGCAACCCGAGGAAGCCCGCGGTCACATGTGGAATCACATCGTGGATGGCACCCCTGCAAGAATCAAATTAATCCGGG
CCAGAAATGAATCAAAAGAATAG

Upstream 100 bases:

>100_bases
TTGCCCGTCACATCTGACGGTTGCTCGGCGCAGGCGGTAAGGGTATCCTCGTGCGCGGGCCGATTGCGTGTTTAGCAAAA
GACAATACTGCGATCACAGA

Downstream 100 bases:

>100_bases
CAGGACCTCGCTGCCACTGATCATGATCGTCGCGCTGATTCTCGGCGCGTTCACCGGCGTGTACGCCCCGCGTTTCTCGG
CCGACGTCGGCTTCCTCTCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MEEKTNSDADHAYDEIRTRILDGRLEPGQKISHRGLASKLGIGQMPVRSALQRLAAENLVTVFDKRGTYVNDPTRDDLQQ
IFEVRLALESTAAYLAACRGPTPAMAASVERMERLIESGETDIMAEQRIGWVFHQEMFLAARNERLHNFYKLLRAQTLAL
NELPRQDIETVRRGTMEHLAIYSAIRDGQPEEARGHMWNHIVDGTPARIKLIRARNESKE

Sequences:

>Translated_220_residues
MEEKTNSDADHAYDEIRTRILDGRLEPGQKISHRGLASKLGIGQMPVRSALQRLAAENLVTVFDKRGTYVNDPTRDDLQQ
IFEVRLALESTAAYLAACRGPTPAMAASVERMERLIESGETDIMAEQRIGWVFHQEMFLAARNERLHNFYKLLRAQTLAL
NELPRQDIETVRRGTMEHLAIYSAIRDGQPEEARGHMWNHIVDGTPARIKLIRARNESKE
>Mature_220_residues
MEEKTNSDADHAYDEIRTRILDGRLEPGQKISHRGLASKLGIGQMPVRSALQRLAAENLVTVFDKRGTYVNDPTRDDLQQ
IFEVRLALESTAAYLAACRGPTPAMAASVERMERLIESGETDIMAEQRIGWVFHQEMFLAARNERLHNFYKLLRAQTLAL
NELPRQDIETVRRGTMEHLAIYSAIRDGQPEEARGHMWNHIVDGTPARIKLIRARNESKE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25062; Mature: 25062

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKTNSDADHAYDEIRTRILDGRLEPGQKISHRGLASKLGIGQMPVRSALQRLAAENLV
CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TVFDKRGTYVNDPTRDDLQQIFEVRLALESTAAYLAACRGPTPAMAASVERMERLIESGE
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
TDIMAEQRIGWVFHQEMFLAARNERLHNFYKLLRAQTLALNELPRQDIETVRRGTMEHLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IYSAIRDGQPEEARGHMWNHIVDGTPARIKLIRARNESKE
HHHHHHCCCCCHHHHHHHHHHCCCCCHHHEEEECCCCCCC
>Mature Secondary Structure
MEEKTNSDADHAYDEIRTRILDGRLEPGQKISHRGLASKLGIGQMPVRSALQRLAAENLV
CCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TVFDKRGTYVNDPTRDDLQQIFEVRLALESTAAYLAACRGPTPAMAASVERMERLIESGE
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
TDIMAEQRIGWVFHQEMFLAARNERLHNFYKLLRAQTLALNELPRQDIETVRRGTMEHLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
IYSAIRDGQPEEARGHMWNHIVDGTPARIKLIRARNESKE
HHHHHHCCCCCHHHHHHHHHHCCCCCHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]