| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ttuB [H]
Identifier: 238027807
GI number: 238027807
Start: 2436509
End: 2437819
Strand: Direct
Name: ttuB [H]
Synonym: bglu_1g22350
Alternate gene names: 238027807
Gene position: 2436509-2437819 (Clockwise)
Preceding gene: 238027806
Following gene: 238027812
Centisome position: 62.37
GC content: 66.59
Gene sequence:
>1311_bases GTGACCGTTACCTCTCCCCCCCTCGCCGCAGCCGGCGACGAGCCGCGCGTGATGTCGAAGATCGCATGGCGTTTGATGCC AACCCTCGTCGTGATGTTTCTGATCTCGTTCATCGACCGTCAGAACGTCGGCTTCGCCAAGCTGCAAATGGTGCATAGCC TGAACATGACGGAGGCCGCGTTCGGGCTTGCCTCGTCGCTGTTCTTCATCGGCTATCTGCTGTTCGAGGTGCCGAGCACG CTTGCGCTGCATCGCTTCGGCGCGCGCGTGTGGCTCGCGCGGATCATGCTGACGTGGGGCTTGATCACCGTCGCGATGGG CTTCACGACCTCGATGCCGGTGTTCTGCGGGCTGCGCTTCCTGCTCGGCGTTGCCGAGGCCGGCTTCTATCCGGGCGCGA TTTATTACATGACGCTGTGGTTTCCGCAGAGCTACCGCGCACGCGTGCTCGGCATCTTCACGCTCGGCAGCGCGCTCGCG AACATGCTCGGCTCGCTGGTCGGCGGCTGGCTGCTGAGCCTGAGCGGAATCGGCGGGCTGGCGGGCTGGCAGTGGGTGTT CATCGCGACCGGACTGCCCGCCGTGATCGTCGGCATTCTCGTGTTCCGGCTGCTGCCGACGTCGTTCCGCGAAGCGCGCT TCCTGTCCGATCACGAAAAGGCGATCGTCGGGGCCGCGCTCGAACGCGAGGCTCCGCTGCGGGCCGAACATTCGCAGCCG TGGAAGGCCCTGCTCGATCCGCGCGTGATCCTGTTCGCGGCCACCTACATGATGATGTCGACCTCGCTGTACGGCGTGAC GTACTGGCTGCCGACCCTCGTCAAGTCGTTCGGCGTGGCGAGCGGCACCAACGGCCTGCTGAGCATGCTGCCGTGGGCGC TGGCCGTGGTGCTGCTGATCTGGCTGCCGCCGAAGCTGCGCCGCGCGAAGAGCCTGCTGCGCACGATCGGGATCGTGGCG CTGCTGGCGGCAACCGGGTTCGTGCTGAGCCTCGTGCTGCCCACCACGCCGCTGCGCTTCATCGCGCTGGTGCTCGGCGG CGCGTGCATTCCCTTGATCTATCCGTGCTTCTGGTCGATGCCGCCGCGCTACTTCACGGGCGCGCGCGCTGCGGCAAGCG TGGCCGCGATCAATTCGATCGGCAATCTCGGCGGATTTTTCGGCCAGAACCTGATGCCGCTCGCGGGCAAGCTGACCGGC ACCGCGTTCGGACCGATGATCGTGCCGATCGTTTGTTTGAGCGTGCTGGGAATCGGTGCGTTGGTCGGCTGGGCGCGGTC CGGGCGGTCGATGGCGGCGGCGAGCGCGTGA
Upstream 100 bases:
>100_bases GGCGCCGCATCGGGCGCCTCGCTCGTCTTTGCAGTACCAGCGTGCGGGTAGCCGCCGCTCGTTCGCATTCGTACCAGTTC GTATCCACCAGGAGTCTCGT
Downstream 100 bases:
>100_bases GGCTGGGCTGGTGAAGCGGGCCGGACGGACGCCTTGCCGGGCGGGCGTCCGTTTCGCCGCCGTGGCTCAGCTCGCGTTGC AGGCCGGCTCGGTCCGGCGG
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 436; Mature: 435
Protein sequence:
>436_residues MTVTSPPLAAAGDEPRVMSKIAWRLMPTLVVMFLISFIDRQNVGFAKLQMVHSLNMTEAAFGLASSLFFIGYLLFEVPST LALHRFGARVWLARIMLTWGLITVAMGFTTSMPVFCGLRFLLGVAEAGFYPGAIYYMTLWFPQSYRARVLGIFTLGSALA NMLGSLVGGWLLSLSGIGGLAGWQWVFIATGLPAVIVGILVFRLLPTSFREARFLSDHEKAIVGAALEREAPLRAEHSQP WKALLDPRVILFAATYMMMSTSLYGVTYWLPTLVKSFGVASGTNGLLSMLPWALAVVLLIWLPPKLRRAKSLLRTIGIVA LLAATGFVLSLVLPTTPLRFIALVLGGACIPLIYPCFWSMPPRYFTGARAAASVAAINSIGNLGGFFGQNLMPLAGKLTG TAFGPMIVPIVCLSVLGIGALVGWARSGRSMAAASA
Sequences:
>Translated_436_residues MTVTSPPLAAAGDEPRVMSKIAWRLMPTLVVMFLISFIDRQNVGFAKLQMVHSLNMTEAAFGLASSLFFIGYLLFEVPST LALHRFGARVWLARIMLTWGLITVAMGFTTSMPVFCGLRFLLGVAEAGFYPGAIYYMTLWFPQSYRARVLGIFTLGSALA NMLGSLVGGWLLSLSGIGGLAGWQWVFIATGLPAVIVGILVFRLLPTSFREARFLSDHEKAIVGAALEREAPLRAEHSQP WKALLDPRVILFAATYMMMSTSLYGVTYWLPTLVKSFGVASGTNGLLSMLPWALAVVLLIWLPPKLRRAKSLLRTIGIVA LLAATGFVLSLVLPTTPLRFIALVLGGACIPLIYPCFWSMPPRYFTGARAAASVAAINSIGNLGGFFGQNLMPLAGKLTG TAFGPMIVPIVCLSVLGIGALVGWARSGRSMAAASA >Mature_435_residues TVTSPPLAAAGDEPRVMSKIAWRLMPTLVVMFLISFIDRQNVGFAKLQMVHSLNMTEAAFGLASSLFFIGYLLFEVPSTL ALHRFGARVWLARIMLTWGLITVAMGFTTSMPVFCGLRFLLGVAEAGFYPGAIYYMTLWFPQSYRARVLGIFTLGSALAN MLGSLVGGWLLSLSGIGGLAGWQWVFIATGLPAVIVGILVFRLLPTSFREARFLSDHEKAIVGAALEREAPLRAEHSQPW KALLDPRVILFAATYMMMSTSLYGVTYWLPTLVKSFGVASGTNGLLSMLPWALAVVLLIWLPPKLRRAKSLLRTIGIVAL LAATGFVLSLVLPTTPLRFIALVLGGACIPLIYPCFWSMPPRYFTGARAAASVAAINSIGNLGGFFGQNLMPLAGKLTGT AFGPMIVPIVCLSVLGIGALVGWARSGRSMAAASA
Specific function: Component of the tartrate utilization system and may allow entry of tartrate and tartrate dehydrogenase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Escherichia coli, GI87082071, Length=373, Percent_Identity=34.3163538873995, Blast_Score=205, Evalue=4e-54, Organism=Escherichia coli, GI87082320, Length=299, Percent_Identity=27.4247491638796, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1789515, Length=298, Percent_Identity=24.1610738255034, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI2367379, Length=437, Percent_Identity=23.1121281464531, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1789152, Length=309, Percent_Identity=23.3009708737864, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17569727, Length=209, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6322025, Length=365, Percent_Identity=26.5753424657534, Blast_Score=90, Evalue=6e-19, Organism=Saccharomyces cerevisiae, GI6319876, Length=249, Percent_Identity=28.5140562248996, Blast_Score=86, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6321502, Length=202, Percent_Identity=30.6930693069307, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6321698, Length=276, Percent_Identity=21.7391304347826, Blast_Score=75, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6322612, Length=253, Percent_Identity=27.6679841897233, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6319250, Length=247, Percent_Identity=24.6963562753036, Blast_Score=70, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6323032, Length=206, Percent_Identity=22.8155339805825, Blast_Score=64, Evalue=6e-11, Organism=Drosophila melanogaster, GI24658696, Length=216, Percent_Identity=28.7037037037037, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 46874; Mature: 46743
Theoretical pI: Translated: 10.83; Mature: 10.83
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVTSPPLAAAGDEPRVMSKIAWRLMPTLVVMFLISFIDRQNVGFAKLQMVHSLNMTEAA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH FGLASSLFFIGYLLFEVPSTLALHRFGARVWLARIMLTWGLITVAMGFTTSMPVFCGLRF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LLGVAEAGFYPGAIYYMTLWFPQSYRARVLGIFTLGSALANMLGSLVGGWLLSLSGIGGL HHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AGWQWVFIATGLPAVIVGILVFRLLPTSFREARFLSDHEKAIVGAALEREAPLRAEHSQP CHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC WKALLDPRVILFAATYMMMSTSLYGVTYWLPTLVKSFGVASGTNGLLSMLPWALAVVLLI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH WLPPKLRRAKSLLRTIGIVALLAATGFVLSLVLPTTPLRFIALVLGGACIPLIYPCFWSM HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCC PPRYFTGARAAASVAAINSIGNLGGFFGQNLMPLAGKLTGTAFGPMIVPIVCLSVLGIGA CCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LVGWARSGRSMAAASA HHHHHHCCCCHHCCCC >Mature Secondary Structure TVTSPPLAAAGDEPRVMSKIAWRLMPTLVVMFLISFIDRQNVGFAKLQMVHSLNMTEAA CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHH FGLASSLFFIGYLLFEVPSTLALHRFGARVWLARIMLTWGLITVAMGFTTSMPVFCGLRF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH LLGVAEAGFYPGAIYYMTLWFPQSYRARVLGIFTLGSALANMLGSLVGGWLLSLSGIGGL HHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC AGWQWVFIATGLPAVIVGILVFRLLPTSFREARFLSDHEKAIVGAALEREAPLRAEHSQP CHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC WKALLDPRVILFAATYMMMSTSLYGVTYWLPTLVKSFGVASGTNGLLSMLPWALAVVLLI HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH WLPPKLRRAKSLLRTIGIVALLAATGFVLSLVLPTTPLRFIALVLGGACIPLIYPCFWSM HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHCC PPRYFTGARAAASVAAINSIGNLGGFFGQNLMPLAGKLTGTAFGPMIVPIVCLSVLGIGA CCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH LVGWARSGRSMAAASA HHHHHHCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7592429 [H]