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The map label for this gene is yphD [C]

Identifier: 238027778

GI number: 238027778

Start: 2399254

End: 2400399

Strand: Direct

Name: yphD [C]

Synonym: bglu_1g22020

Alternate gene names: 238027778

Gene position: 2399254-2400399 (Clockwise)

Preceding gene: 238027777

Following gene: 238027779

Centisome position: 61.42

GC content: 68.59

Gene sequence:

>1146_bases
ATGGGTGTAGCCGGCAAGCATCTGACAGCGCAGACGCAGGACACGCCGCCCGCGGGCGGCCGGGCCGACGAGCGGCTGCG
CGGCGAGGCGTGGTACTCGCGCCTGCTCAACCGCCCCGAATTCGCCGCGATTTCCGGCGCCGTGCTGGTGTTCGCGGTGT
TCGCGATCGGCGCGGGCGGCTCGGGCATGTTCAACCTCGACGGCATCATGAACTGGTCGCAGGTGGCCGCCTATCTCGGC
ATCCTCGCGGTGGGCGCCTGCCTGCTGATGGTGGCGGGCGAGTTCGACCTGTCGATCGGCTCGATGATCGGCTTCTCGGG
GATGATGGTGGCGATCCCCACCGCCTATTTCCACTGGCCGATCTGGGCCGCCGTGCTGTTCGCGTTCGCCAGCTCGATGG
CGCTCGGCGCGCTGAACGGCTATCTCGTGATGCGCACCCGGCTGCCCTCGTTCATCGTCACGCTGGCATTCCTGTTCATC
CTGCGCGGCCTCACGCTCGCGCTGTCGATCATGTTCGCCGACCGCACCATCATCTCGGGCATGGGCGACTACGCCCACGC
CGATCCGTTCACCCATCTGCTGTTCCAGGGCGTGGCCTTCCACGACCTGTTCCGCTGGCTCGCGCAGGCCGGCATCGGCG
GCCTGCTCGACAACGGCGAGCCGCTCGTGCCGGGCGTGCCGAAGGTGATCCTGTGGTGGTTCGCGGCCACCGCGATCGGC
GCGTTCGTGCTGGCCAAGACGCGCTGGGGCAACTGGATCCTCGCCGTGGGCGGCGACGCCAACGCCGCCAAGAACGTCGG
CGTGCCGGTGCGCCGCGTGAAGATCCTGCTGTTCGTGCTGACCGCGTTCTGCGCCTGCCTGTTCGCCGTGCTGCAGGTGG
CCGACATCGGCTCGGCGGCGGCCGACCGCGGGCTGCAGAAGGAGTTCGAGGCGATCATCGCCGCGGTGATCGGCGGCACG
CTGCTCACGGGCGGCTACGGCTCGGTGATCGGCGCCGCGTTCGGCGCGCTGATCTTCGGCGTGGTGCAGATCGGCATCAC
CTATACCAACATCAGCTCGGACTGGTTCCGCGTATTCCTCGGCGTGATGCTGCTGCTCGCCGTGCTGTTCAACCACTATG
TGCGCCGCCGCGTGGCGCAGTCGTAA

Upstream 100 bases:

>100_bases
GCTCATCGTCATCGTTCATCGCGCGGCGGCGGCGCCGCGCCTCTGTACCGACGCGGCGGAGTGGCCCTGCTCCGTGCGCG
CCGGGCATCAAGGAGACATC

Downstream 100 bases:

>100_bases
GGGAGCCGAATCATGTCCACGCCTTCCTCTTCCGCCTCCCCGTCCGGCGTCGCCGCCGACACGATCCTCGAGCTCGACGG
CGTCAGCAAGTTCTTCGGCA

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MGVAGKHLTAQTQDTPPAGGRADERLRGEAWYSRLLNRPEFAAISGAVLVFAVFAIGAGGSGMFNLDGIMNWSQVAAYLG
ILAVGACLLMVAGEFDLSIGSMIGFSGMMVAIPTAYFHWPIWAAVLFAFASSMALGALNGYLVMRTRLPSFIVTLAFLFI
LRGLTLALSIMFADRTIISGMGDYAHADPFTHLLFQGVAFHDLFRWLAQAGIGGLLDNGEPLVPGVPKVILWWFAATAIG
AFVLAKTRWGNWILAVGGDANAAKNVGVPVRRVKILLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGT
LLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLLAVLFNHYVRRRVAQS

Sequences:

>Translated_381_residues
MGVAGKHLTAQTQDTPPAGGRADERLRGEAWYSRLLNRPEFAAISGAVLVFAVFAIGAGGSGMFNLDGIMNWSQVAAYLG
ILAVGACLLMVAGEFDLSIGSMIGFSGMMVAIPTAYFHWPIWAAVLFAFASSMALGALNGYLVMRTRLPSFIVTLAFLFI
LRGLTLALSIMFADRTIISGMGDYAHADPFTHLLFQGVAFHDLFRWLAQAGIGGLLDNGEPLVPGVPKVILWWFAATAIG
AFVLAKTRWGNWILAVGGDANAAKNVGVPVRRVKILLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGT
LLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLLAVLFNHYVRRRVAQS
>Mature_380_residues
GVAGKHLTAQTQDTPPAGGRADERLRGEAWYSRLLNRPEFAAISGAVLVFAVFAIGAGGSGMFNLDGIMNWSQVAAYLGI
LAVGACLLMVAGEFDLSIGSMIGFSGMMVAIPTAYFHWPIWAAVLFAFASSMALGALNGYLVMRTRLPSFIVTLAFLFIL
RGLTLALSIMFADRTIISGMGDYAHADPFTHLLFQGVAFHDLFRWLAQAGIGGLLDNGEPLVPGVPKVILWWFAATAIGA
FVLAKTRWGNWILAVGGDANAAKNVGVPVRRVKILLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGTL
LTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLLAVLFNHYVRRRVAQS

Specific function: Probably part of the binding-protein-dependent transport system y4mIJK. This system probably transports a sugar. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=353, Percent_Identity=30.028328611898, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082395, Length=302, Percent_Identity=30.4635761589404, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=31.6129032258064, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI145693152, Length=297, Percent_Identity=27.9461279461279, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1790524, Length=312, Percent_Identity=27.2435897435897, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=34.0579710144928, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787794, Length=325, Percent_Identity=26.7692307692308, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI145693214, Length=282, Percent_Identity=31.2056737588652, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 40534; Mature: 40403

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVAGKHLTAQTQDTPPAGGRADERLRGEAWYSRLLNRPEFAAISGAVLVFAVFAIGAGG
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
SGMFNLDGIMNWSQVAAYLGILAVGACLLMVAGEFDLSIGSMIGFSGMMVAIPTAYFHWP
CCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHH
IWAAVLFAFASSMALGALNGYLVMRTRLPSFIVTLAFLFILRGLTLALSIMFADRTIISG
HHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
MGDYAHADPFTHLLFQGVAFHDLFRWLAQAGIGGLLDNGEPLVPGVPKVILWWFAATAIG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AFVLAKTRWGNWILAVGGDANAAKNVGVPVRRVKILLFVLTAFCACLFAVLQVADIGSAA
HHHHHEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ADRGLQKEFEAIIAAVIGGTLLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
GVMLLLAVLFNHYVRRRVAQS
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVAGKHLTAQTQDTPPAGGRADERLRGEAWYSRLLNRPEFAAISGAVLVFAVFAIGAGG
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
SGMFNLDGIMNWSQVAAYLGILAVGACLLMVAGEFDLSIGSMIGFSGMMVAIPTAYFHWP
CCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHH
IWAAVLFAFASSMALGALNGYLVMRTRLPSFIVTLAFLFILRGLTLALSIMFADRTIISG
HHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
MGDYAHADPFTHLLFQGVAFHDLFRWLAQAGIGGLLDNGEPLVPGVPKVILWWFAATAIG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
AFVLAKTRWGNWILAVGGDANAAKNVGVPVRRVKILLFVLTAFCACLFAVLQVADIGSAA
HHHHHEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ADRGLQKEFEAIIAAVIGGTLLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
GVMLLLAVLFNHYVRRRVAQS
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]