| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027684
Identifier: 238027684
GI number: 238027684
Start: 2296838
End: 2297647
Strand: Direct
Name: 238027684
Synonym: bglu_1g21050
Alternate gene names: NA
Gene position: 2296838-2297647 (Clockwise)
Preceding gene: 238027683
Following gene: 238027685
Centisome position: 58.8
GC content: 65.43
Gene sequence:
>810_bases ATGCCGGCCCGCGCGCCGAAAGCCAAGGGCGAGATGCGCCCCACCCGGCCGAGCGCGGCGGTGCGCATCGCCTATCAGCG GTCGCTCGACAATCTGATTGCCGAGATGCACGCCTCGACGCTCTACTGGCTGCGGGCTACCTACCGCGCCAACGAGGCCG AAATCGCAATGGATGCGTCGCCCACCTCGGCCCTGGCCGCTCAGCTCGCGCGCCGGGCCGCGCAGTGGCGTAAGCGCTTT GCCGAGGAGGCGTCAACACTCGCCCGCCAGTTCATCGCGAAGGTCGATCGGCACGCCACCCAGGCGACGCGGCAGACGGC CGTCGCCATGACCGGCCTGTCTGTTTCCGTGAAGGACACGCTGACCTCGAAGACTGTCATGCAGGCGTCGATCCAGCAGA ACGTCTCCCTGATCAGGTCGATCCAGTCCGAATATGCGACAGAGGTCGAGGGCCTGGTGATGCGCAGCGTCACGGCGGGC CGCGACCTGGGCGCGCTCACCGACGAGCTTGAGAAGCGCTACGCGATCACGCGGCGCCGAGCGGCGTTCATCGCCACCGA CCAGAACAACAAGGCGACCGCTCAGATGGCGCGCGTCCGGCAACTCGATCTTGGCATCACGAAGGCGCGCTGGCTGCACG TGGGTGGAGGCAAAAAACCGCGCCACTCGCACGTCCAGGCCAACGGCAAGGTTTTCGACTTGAAACGGGGGCTTATGATC GACGGCGAATACATTTTCCCCGGCGAGTTGCCGAAGTGCGGATGCGTGGGTGCTCCGATTATTCCGGGTGTGGATGATGA AGACGAGTAA
Upstream 100 bases:
>100_bases CGATCGACGTCGACGATCTGCCCGAACCGCCAGGCGGCGCCGGTGGCGAAGGTGAGGAAAGCGAAGACGTCGACACGGAC AGCGCCGGCAAGGTGTCCTG
Downstream 100 bases:
>100_bases AGACGAAATTCTGGTCGCTTTTGACAAGGCGACGGTGCGATCTTTCGATAAAGACGGTCGCATGCGTGTGTCGATCAGCC GGATCTCAAAAGCTGGCGTG
Product: putative phage head morphogenesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MPARAPKAKGEMRPTRPSAAVRIAYQRSLDNLIAEMHASTLYWLRATYRANEAEIAMDASPTSALAAQLARRAAQWRKRF AEEASTLARQFIAKVDRHATQATRQTAVAMTGLSVSVKDTLTSKTVMQASIQQNVSLIRSIQSEYATEVEGLVMRSVTAG RDLGALTDELEKRYAITRRRAAFIATDQNNKATAQMARVRQLDLGITKARWLHVGGGKKPRHSHVQANGKVFDLKRGLMI DGEYIFPGELPKCGCVGAPIIPGVDDEDE
Sequences:
>Translated_269_residues MPARAPKAKGEMRPTRPSAAVRIAYQRSLDNLIAEMHASTLYWLRATYRANEAEIAMDASPTSALAAQLARRAAQWRKRF AEEASTLARQFIAKVDRHATQATRQTAVAMTGLSVSVKDTLTSKTVMQASIQQNVSLIRSIQSEYATEVEGLVMRSVTAG RDLGALTDELEKRYAITRRRAAFIATDQNNKATAQMARVRQLDLGITKARWLHVGGGKKPRHSHVQANGKVFDLKRGLMI DGEYIFPGELPKCGCVGAPIIPGVDDEDE >Mature_268_residues PARAPKAKGEMRPTRPSAAVRIAYQRSLDNLIAEMHASTLYWLRATYRANEAEIAMDASPTSALAAQLARRAAQWRKRFA EEASTLARQFIAKVDRHATQATRQTAVAMTGLSVSVKDTLTSKTVMQASIQQNVSLIRSIQSEYATEVEGLVMRSVTAGR DLGALTDELEKRYAITRRRAAFIATDQNNKATAQMARVRQLDLGITKARWLHVGGGKKPRHSHVQANGKVFDLKRGLMID GEYIFPGELPKCGCVGAPIIPGVDDEDE
Specific function: Unknown
COG id: COG2369
COG function: function code S; Uncharacterized protein, homolog of phage Mu protein gp30
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To E.coli plasmid IncP-alpha RP4 protein traN [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006528 [H]
Pfam domain/function: PF04233 Phage_Mu_F [H]
EC number: NA
Molecular weight: Translated: 29590; Mature: 29459
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARAPKAKGEMRPTRPSAAVRIAYQRSLDNLIAEMHASTLYWLRATYRANEAEIAMDAS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC PTSALAAQLARRAAQWRKRFAEEASTLARQFIAKVDRHATQATRQTAVAMTGLSVSVKDT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHH LTSKTVMQASIQQNVSLIRSIQSEYATEVEGLVMRSVTAGRDLGALTDELEKRYAITRRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH AAFIATDQNNKATAQMARVRQLDLGITKARWLHVGGGKKPRHSHVQANGKVFDLKRGLMI EEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECCCEEEEECCCEEE DGEYIFPGELPKCGCVGAPIIPGVDDEDE CCCEECCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PARAPKAKGEMRPTRPSAAVRIAYQRSLDNLIAEMHASTLYWLRATYRANEAEIAMDAS CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC PTSALAAQLARRAAQWRKRFAEEASTLARQFIAKVDRHATQATRQTAVAMTGLSVSVKDT CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHH LTSKTVMQASIQQNVSLIRSIQSEYATEVEGLVMRSVTAGRDLGALTDELEKRYAITRRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH AAFIATDQNNKATAQMARVRQLDLGITKARWLHVGGGKKPRHSHVQANGKVFDLKRGLMI EEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEECCCEEEEECCCEEE DGEYIFPGELPKCGCVGAPIIPGVDDEDE CCCEECCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]