| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
Click here to switch to the map view.
The map label for this gene is 238027570
Identifier: 238027570
GI number: 238027570
Start: 2173349
End: 2175031
Strand: Direct
Name: 238027570
Synonym: bglu_1g19880
Alternate gene names: NA
Gene position: 2173349-2175031 (Clockwise)
Preceding gene: 238027569
Following gene: 238027571
Centisome position: 55.63
GC content: 67.44
Gene sequence:
>1683_bases ATGCAAACCCCGAAACAGGTTTGGACGCTGCTGTGCGCGCTCGCCGCGACGGCCGCCGCTCCCGCCCAGGCGCAGACCCG CCCCGCCGGCAACCCGCTCGAATCGCTGCCGCAGATCAGCCCGCCCCAGCGCGCCGCCGTCACGGTCCAGGTCGAGCCGC AGGCGCAGCAGGTGCAGCAGTTGCTCGCGCGCCATCTCACGCCGGCCACGATCCGCATCGAAGGCGTCAGATCGATTCCG TTCGAGGAGGTATCGGCGCGCTTCACGCCGCTCGTGGGCAAGGACATCACGATAGGACAACTGATCGAAACCGCGAACGG CGTGACCAAGCTCTACCAGGACCGCAGCTACGCCCTGTCGTTCGCGTTCGTGCCGGCGCAGACTTTCGAGGACGGCGTGG TGAGGATCACGGTGGTCGAGGGCTTCGTGTCCGACGTGCAGATCACCGGCAACCCCGGCGCGATGGAGTCGAAGCTGCGC GCGGTGGCCGCGCACATCACCGCCGACCGGCCGCTGCGGCGCGCCACGTTCGAGCGCTACGTGAACACTTTCGGCCTGCT GCCCGGCATCACCGTGAAGGCCAACGTGCCGCCGCCGCAGAACACCGACGGCGCGACCACCCTCTCGCTCGACGTCAAGC GCAAGCCGATCAACGTGAGCAGCGGCATCGCCACCAGCAATCCCGGCGTGCAGGGGCTGTTTACCGTGACCGAAAGCGGC CTGACCTCGCTCGGTGAGCAACTGAGCCTGTCGGCGCTCGCGCCCAAAGGCCCGAACAACGTGACCTACGTGGCGGCAAG CGGTTCGGTGCCGATCGGCAGCAATGGCCTCACGGCGCGCGTCGACGCGAGCCATTACCGCGGCAACCCGAGCGACAACC CGGGCCTGCCCTCCTACGTGAAGCGCACCGTGGTCAACGACAAGCTCGGCGTTTCCGCCTCGTACCCGATCCTGCTGAAC AACCAGCGCAGCCTGCTCGCCACGGTGTCCGGCTACGCCTCGCACAGCGAAGACCAGTACCGGAACCAGATCGGCGGCCA GTTCATCGGCCTGCGCTCGCAGGTGCGCGTGCTGCAGGCGCAGATGGACTTCACCAACGTGCGGCCGACCTCGGTCACCA AGGTCAGCCTCAACGTCGCAAAGGCGTTCGACATTCTCGGCGCGTCGAAATCGGCCGACACCAACATCGCCGGCTCGACG CCGAGCAACCCGGCCTCGATCACCTTCGTGCGCACCGGCGCGACGCTCGTGCAGACCAACGAGTGGCCGCTCAAGATCGG CACCACGCTGCAGTTCACGGGCCAGTTCAGCCCGGTCTCGCTGCCCACCACCGAGCAGATCGCGTTCGGCGCGCAGCGCT TCGCGCTCGGCTACGAGCCCGGCGAAACCTCGGGCGATTCGGGTTGGGGCATGTCCGCCGAGATCAACCGCTCGTTCGCG CTCGGCCTTGCCTACCTGAAGTCGATCACGCCTTACATCGCCTATGACATGGCGCGCGTCTATCTGCATGCCGGCACGCC ACAGCCGAACCGGCTCTCGTCGGTCGGCCTCGGCGTGCGCGTGTCGGACGGCCAGCACTACAACATCGACGTCTCGGTCG CGAAGCCGATCGGCGACGCGCCGATCGAAAGCGCCTCGCGCAGCCCGCGCGTCAATGCGTCGTTCTCCTATCAGTTGAAT TGA
Upstream 100 bases:
>100_bases CGGTCATCACAGGTTGCATGAGACGGAGGGCATCGCTCGCGATGTCCTCCGTTTGCAGTGGAAAACTAAAAAGCAGCAGG CCTACGAGGACTCACCGACA
Downstream 100 bases:
>100_bases TTCCGGCGGGCGGCCGCGTCGATTAGAGGCACCTCTATCAAACGCGGCGGCCTCTTTCACGTATGCTCAGCGAAGGCTCC CGGCCCTTGCGAGGCGCGGG
Product: putative exported heme utilisation-like protein
Products: NA
Alternate protein names: Hemolysin Activation/Secretion Protein; Polypeptide-Transport-Associated Domain Protein ShlB-Type; Activation/Secretion Signal Peptide Protein; Hemolysin Activation/Secretion Protein-Like; Exported Protein; POTRA Domain ShlB-Type Family; Hemolysin Activation/Secretion Protein-Like Protein; ShlB-Type Family Protein; Secreted Protein Related Heme Utilisation; OMP85 Family Outer Membrane Protein; Exported Heme Utilisation Related Protein; Heme/Hemopexin Utilization Protein; HlyB Family Hemolysin Activator Protein
Number of amino acids: Translated: 560; Mature: 560
Protein sequence:
>560_residues MQTPKQVWTLLCALAATAAAPAQAQTRPAGNPLESLPQISPPQRAAVTVQVEPQAQQVQQLLARHLTPATIRIEGVRSIP FEEVSARFTPLVGKDITIGQLIETANGVTKLYQDRSYALSFAFVPAQTFEDGVVRITVVEGFVSDVQITGNPGAMESKLR AVAAHITADRPLRRATFERYVNTFGLLPGITVKANVPPPQNTDGATTLSLDVKRKPINVSSGIATSNPGVQGLFTVTESG LTSLGEQLSLSALAPKGPNNVTYVAASGSVPIGSNGLTARVDASHYRGNPSDNPGLPSYVKRTVVNDKLGVSASYPILLN NQRSLLATVSGYASHSEDQYRNQIGGQFIGLRSQVRVLQAQMDFTNVRPTSVTKVSLNVAKAFDILGASKSADTNIAGST PSNPASITFVRTGATLVQTNEWPLKIGTTLQFTGQFSPVSLPTTEQIAFGAQRFALGYEPGETSGDSGWGMSAEINRSFA LGLAYLKSITPYIAYDMARVYLHAGTPQPNRLSSVGLGVRVSDGQHYNIDVSVAKPIGDAPIESASRSPRVNASFSYQLN
Sequences:
>Translated_560_residues MQTPKQVWTLLCALAATAAAPAQAQTRPAGNPLESLPQISPPQRAAVTVQVEPQAQQVQQLLARHLTPATIRIEGVRSIP FEEVSARFTPLVGKDITIGQLIETANGVTKLYQDRSYALSFAFVPAQTFEDGVVRITVVEGFVSDVQITGNPGAMESKLR AVAAHITADRPLRRATFERYVNTFGLLPGITVKANVPPPQNTDGATTLSLDVKRKPINVSSGIATSNPGVQGLFTVTESG LTSLGEQLSLSALAPKGPNNVTYVAASGSVPIGSNGLTARVDASHYRGNPSDNPGLPSYVKRTVVNDKLGVSASYPILLN NQRSLLATVSGYASHSEDQYRNQIGGQFIGLRSQVRVLQAQMDFTNVRPTSVTKVSLNVAKAFDILGASKSADTNIAGST PSNPASITFVRTGATLVQTNEWPLKIGTTLQFTGQFSPVSLPTTEQIAFGAQRFALGYEPGETSGDSGWGMSAEINRSFA LGLAYLKSITPYIAYDMARVYLHAGTPQPNRLSSVGLGVRVSDGQHYNIDVSVAKPIGDAPIESASRSPRVNASFSYQLN >Mature_560_residues MQTPKQVWTLLCALAATAAAPAQAQTRPAGNPLESLPQISPPQRAAVTVQVEPQAQQVQQLLARHLTPATIRIEGVRSIP FEEVSARFTPLVGKDITIGQLIETANGVTKLYQDRSYALSFAFVPAQTFEDGVVRITVVEGFVSDVQITGNPGAMESKLR AVAAHITADRPLRRATFERYVNTFGLLPGITVKANVPPPQNTDGATTLSLDVKRKPINVSSGIATSNPGVQGLFTVTESG LTSLGEQLSLSALAPKGPNNVTYVAASGSVPIGSNGLTARVDASHYRGNPSDNPGLPSYVKRTVVNDKLGVSASYPILLN NQRSLLATVSGYASHSEDQYRNQIGGQFIGLRSQVRVLQAQMDFTNVRPTSVTKVSLNVAKAFDILGASKSADTNIAGST PSNPASITFVRTGATLVQTNEWPLKIGTTLQFTGQFSPVSLPTTEQIAFGAQRFALGYEPGETSGDSGWGMSAEINRSFA LGLAYLKSITPYIAYDMARVYLHAGTPQPNRLSSVGLGVRVSDGQHYNIDVSVAKPIGDAPIESASRSPRVNASFSYQLN
Specific function: Unknown
COG id: COG2831
COG function: function code U; Hemolysin activation/secretion protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 59478; Mature: 59478
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTPKQVWTLLCALAATAAAPAQAQTRPAGNPLESLPQISPPQRAAVTVQVEPQAQQVQQ CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCHHHHHHH LLARHLTPATIRIEGVRSIPFEEVSARFTPLVGKDITIGQLIETANGVTKLYQDRSYALS HHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE FAFVPAQTFEDGVVRITVVEGFVSDVQITGNPGAMESKLRAVAAHITADRPLRRATFERY EEEEECCCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH VNTFGLLPGITVKANVPPPQNTDGATTLSLDVKRKPINVSSGIATSNPGVQGLFTVTESG HHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHH LTSLGEQLSLSALAPKGPNNVTYVAASGSVPIGSNGLTARVDASHYRGNPSDNPGLPSYV HHHHHHHHEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHCCCCCCCCCCCHHHH KRTVVNDKLGVSASYPILLNNQRSLLATVSGYASHSEDQYRNQIGGQFIGLRSQVRVLQA HHHHHCCCCCCCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHCCEEECHHHHHHHHHH QMDFTNVRPTSVTKVSLNVAKAFDILGASKSADTNIAGSTPSNPASITFVRTGATLVQTN HHCCCCCCCCEEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECC EWPLKIGTTLQFTGQFSPVSLPTTEQIAFGAQRFALGYEPGETSGDSGWGMSAEINRSFA CCCEEECCEEEEECCCCCCCCCCHHHHHHCHHHEEEECCCCCCCCCCCCCCCCCCCCHHH LGLAYLKSITPYIAYDMARVYLHAGTPQPNRLSSVGLGVRVSDGQHYNIDVSVAKPIGDA HHHHHHHHCCHHHHHHEEEEEEECCCCCCCCHHHCCCEEEECCCCEEEEEEEEECCCCCC PIESASRSPRVNASFSYQLN CCCCCCCCCCCCCEEEEEEC >Mature Secondary Structure MQTPKQVWTLLCALAATAAAPAQAQTRPAGNPLESLPQISPPQRAAVTVQVEPQAQQVQQ CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCHHHHHHH LLARHLTPATIRIEGVRSIPFEEVSARFTPLVGKDITIGQLIETANGVTKLYQDRSYALS HHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE FAFVPAQTFEDGVVRITVVEGFVSDVQITGNPGAMESKLRAVAAHITADRPLRRATFERY EEEEECCCCCCCEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH VNTFGLLPGITVKANVPPPQNTDGATTLSLDVKRKPINVSSGIATSNPGVQGLFTVTESG HHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHH LTSLGEQLSLSALAPKGPNNVTYVAASGSVPIGSNGLTARVDASHYRGNPSDNPGLPSYV HHHHHHHHEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEHHHCCCCCCCCCCCHHHH KRTVVNDKLGVSASYPILLNNQRSLLATVSGYASHSEDQYRNQIGGQFIGLRSQVRVLQA HHHHHCCCCCCCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHCCEEECHHHHHHHHHH QMDFTNVRPTSVTKVSLNVAKAFDILGASKSADTNIAGSTPSNPASITFVRTGATLVQTN HHCCCCCCCCEEEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEECC EWPLKIGTTLQFTGQFSPVSLPTTEQIAFGAQRFALGYEPGETSGDSGWGMSAEINRSFA CCCEEECCEEEEECCCCCCCCCCHHHHHHCHHHEEEECCCCCCCCCCCCCCCCCCCCHHH LGLAYLKSITPYIAYDMARVYLHAGTPQPNRLSSVGLGVRVSDGQHYNIDVSVAKPIGDA HHHHHHHHCCHHHHHHEEEEEEECCCCCCCCHHHCCCEEEECCCCEEEEEEEEECCCCCC PIESASRSPRVNASFSYQLN CCCCCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA