| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027569
Identifier: 238027569
GI number: 238027569
Start: 2171843
End: 2173213
Strand: Direct
Name: 238027569
Synonym: bglu_1g19870
Alternate gene names: NA
Gene position: 2171843-2173213 (Clockwise)
Preceding gene: 238027568
Following gene: 238027570
Centisome position: 55.6
GC content: 73.89
Gene sequence:
>1371_bases ATGCAACCGATTCACCCGCTCTCTTCCCCGACCGCCTCGTCGGCGCTGCGCACTTGGCGGCTCGCGCTGACCGTGGCGGC GGCGGCCACCCTGTCCGCGCTGGCCGCCTGCGGCGGCAGCGATATGACGACGCAGGCAGGCACCGGCGGCAGCAATGTTC CGCAATCGACCGGCACCGGCAGCGGCGTCACCTCGCCGTCGAGCAGCGGCACCAGCGGCGTGCTGACCACCACCGGGCAG ACCATCGGCGATCTCGGCACCACCGTCGGCTCGGTGACGATTCCGGGCGTGAGCAGCGGCGTCACGCAGGGCCTCGGCAA CACCGTGTCGAGCCTCGGCAGCGTGGTCAACGCGGCAGCCGACGCACTGAGCAGCGGGCTCGGCCAGACCGGCACGACCG CCAATCCGGTCGGCACCACGGTCGCCGGGCTCGGCAGCGTGGTCAGCGCGGCTGGCACCACGGTAGCGGGCCTCGGCCAG ACCGTCGATTCGCTCGGCACCGGCCAGCTCTCGGCCCTGGCGCCGCTCACCACGCCGCTCGGCACGCTGCTGAACACCAC CGCCAACGGCGTGGAAGCCGGCGGCACGATGCTCGGCAACGTGCTGTCGTCGAGCCAGGTCCAAGCGGTCACGCAACCGC TCAGTTCGGCCATCACGCCGATCGTCACGACGGCCGGCCAGGCCACCCAGACGGCCGGCTCGGCCACCGGCCTCGGCGCG CCGGTTTCGGGCCTGCTGCAGCAGTTGGGCGGCGCGGTCGCGTCGGCCGGCACGCAGCTCGGCAGCACCTCGTCGCAGCC GCTGGTCGGCGACGCGGGCAAGCTCGTGAGCTCGCTCGGCAACACCGTCACCAACGCGGGCGGGCTGGTCGACGCATCCG GCCCGAACGGCGCGCAACCGGTGGCCGGCCTGATCACGAGCCTGGTCGGCAGTTCGAGCGTGACGGTCGCCAATGGCGCA TCGGCGTCGGGCGGCGGCGCGAGCAACCCGCTCAGCGGCCTGCTCGGCTCGCTGACGGGTTCGCTCGGCGGCGCCACGGG CGGCGCGAGCGGGCCGCTGGCGCCGGTCACGGGGCTCGTCTCGACCGTCACGGGCACGCTTGGTTCGGCCACGAGTGGCG CCACCGGCACAGGTGGGACGAATCCGCTCGCGCCCGCCACCGGTTTGCTCAATACTGTCACCGGCGCACTCGGCAGTGCC GCGGGCGGCACGACGTCCGGCTCGCCAGCGGGCTCGCTGCTCTCGCCGGTCACGTCGCTGGTCGGCTCGGTCGCCTCGAC GGCGGGCTCGGGCACCTCGGGCGGCAATTCGACGGGCCTGCTGGCACCGGTCACCGGGTTGCTGGGCACGCTGGGCAGCG CCGGGAAGTAA
Upstream 100 bases:
>100_bases TGGCACCCGTGACCTCGCTGGTGGGCGGGCTGCTCGGCGGCGGCAAGAAATAACGGCGTTTCGTCGGTCAAGTCAATCAA ATCGCGTCAGGAGACCCATC
Downstream 100 bases:
>100_bases TGGCGGCAAACGTCCGTGCCGGCGGGAGGCGCGGGCGGTCATCACAGGTTGCATGAGACGGAGGGCATCGCTCGCGATGT CCTCCGTTTGCAGTGGAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: Hemagglutinin-Related Transmembrane Protein; Triple Helix Repeat-Containing Collagen; Collagen Triple Helix Repeat
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MQPIHPLSSPTASSALRTWRLALTVAAAATLSALAACGGSDMTTQAGTGGSNVPQSTGTGSGVTSPSSSGTSGVLTTTGQ TIGDLGTTVGSVTIPGVSSGVTQGLGNTVSSLGSVVNAAADALSSGLGQTGTTANPVGTTVAGLGSVVSAAGTTVAGLGQ TVDSLGTGQLSALAPLTTPLGTLLNTTANGVEAGGTMLGNVLSSSQVQAVTQPLSSAITPIVTTAGQATQTAGSATGLGA PVSGLLQQLGGAVASAGTQLGSTSSQPLVGDAGKLVSSLGNTVTNAGGLVDASGPNGAQPVAGLITSLVGSSSVTVANGA SASGGGASNPLSGLLGSLTGSLGGATGGASGPLAPVTGLVSTVTGTLGSATSGATGTGGTNPLAPATGLLNTVTGALGSA AGGTTSGSPAGSLLSPVTSLVGSVASTAGSGTSGGNSTGLLAPVTGLLGTLGSAGK
Sequences:
>Translated_456_residues MQPIHPLSSPTASSALRTWRLALTVAAAATLSALAACGGSDMTTQAGTGGSNVPQSTGTGSGVTSPSSSGTSGVLTTTGQ TIGDLGTTVGSVTIPGVSSGVTQGLGNTVSSLGSVVNAAADALSSGLGQTGTTANPVGTTVAGLGSVVSAAGTTVAGLGQ TVDSLGTGQLSALAPLTTPLGTLLNTTANGVEAGGTMLGNVLSSSQVQAVTQPLSSAITPIVTTAGQATQTAGSATGLGA PVSGLLQQLGGAVASAGTQLGSTSSQPLVGDAGKLVSSLGNTVTNAGGLVDASGPNGAQPVAGLITSLVGSSSVTVANGA SASGGGASNPLSGLLGSLTGSLGGATGGASGPLAPVTGLVSTVTGTLGSATSGATGTGGTNPLAPATGLLNTVTGALGSA AGGTTSGSPAGSLLSPVTSLVGSVASTAGSGTSGGNSTGLLAPVTGLLGTLGSAGK >Mature_456_residues MQPIHPLSSPTASSALRTWRLALTVAAAATLSALAACGGSDMTTQAGTGGSNVPQSTGTGSGVTSPSSSGTSGVLTTTGQ TIGDLGTTVGSVTIPGVSSGVTQGLGNTVSSLGSVVNAAADALSSGLGQTGTTANPVGTTVAGLGSVVSAAGTTVAGLGQ TVDSLGTGQLSALAPLTTPLGTLLNTTANGVEAGGTMLGNVLSSSQVQAVTQPLSSAITPIVTTAGQATQTAGSATGLGA PVSGLLQQLGGAVASAGTQLGSTSSQPLVGDAGKLVSSLGNTVTNAGGLVDASGPNGAQPVAGLITSLVGSSSVTVANGA SASGGGASNPLSGLLGSLTGSLGGATGGASGPLAPVTGLVSTVTGTLGSATSGATGTGGTNPLAPATGLLNTVTGALGSA AGGTTSGSPAGSLLSPVTSLVGSVASTAGSGTSGGNSTGLLAPVTGLLGTLGSAGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41270; Mature: 41270
Theoretical pI: Translated: 4.37; Mature: 4.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPIHPLSSPTASSALRTWRLALTVAAAATLSALAACGGSDMTTQAGTGGSNVPQSTGTG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC SGVTSPSSSGTSGVLTTTGQTIGDLGTTVGSVTIPGVSSGVTQGLGNTVSSLGSVVNAAA CCCCCCCCCCCCCEEEECCCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH DALSSGLGQTGTTANPVGTTVAGLGSVVSAAGTTVAGLGQTVDSLGTGQLSALAPLTTPL HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH GTLLNTTANGVEAGGTMLGNVLSSSQVQAVTQPLSSAITPIVTTAGQATQTAGSATGLGA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCC PVSGLLQQLGGAVASAGTQLGSTSSQPLVGDAGKLVSSLGNTVTNAGGLVDASGPNGAQP CHHHHHHHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCH VAGLITSLVGSSSVTVANGASASGGGASNPLSGLLGSLTGSLGGATGGASGPLAPVTGLV HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH STVTGTLGSATSGATGTGGTNPLAPATGLLNTVTGALGSAAGGTTSGSPAGSLLSPVTSL HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH VGSVASTAGSGTSGGNSTGLLAPVTGLLGTLGSAGK HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure MQPIHPLSSPTASSALRTWRLALTVAAAATLSALAACGGSDMTTQAGTGGSNVPQSTGTG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC SGVTSPSSSGTSGVLTTTGQTIGDLGTTVGSVTIPGVSSGVTQGLGNTVSSLGSVVNAAA CCCCCCCCCCCCCEEEECCCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHHH DALSSGLGQTGTTANPVGTTVAGLGSVVSAAGTTVAGLGQTVDSLGTGQLSALAPLTTPL HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH GTLLNTTANGVEAGGTMLGNVLSSSQVQAVTQPLSSAITPIVTTAGQATQTAGSATGLGA HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCC PVSGLLQQLGGAVASAGTQLGSTSSQPLVGDAGKLVSSLGNTVTNAGGLVDASGPNGAQP CHHHHHHHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCH VAGLITSLVGSSSVTVANGASASGGGASNPLSGLLGSLTGSLGGATGGASGPLAPVTGLV HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH STVTGTLGSATSGATGTGGTNPLAPATGLLNTVTGALGSAAGGTTSGSPAGSLLSPVTSL HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH VGSVASTAGSGTSGGNSTGLLAPVTGLLGTLGSAGK HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA