| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027568
Identifier: 238027568
GI number: 238027568
Start: 2170095
End: 2171795
Strand: Direct
Name: 238027568
Synonym: bglu_1g19860
Alternate gene names: NA
Gene position: 2170095-2171795 (Clockwise)
Preceding gene: 238027552
Following gene: 238027569
Centisome position: 55.55
GC content: 75.78
Gene sequence:
>1701_bases ATGGATACCCAAACGATTACCCAAGGCATGCTCCGGACCACGCTGATCGCGGCCACCGCGGCAGCCATGCTTTCCCTCTC CGCCTGCGGCGGTTCCGGTTCGCTGAGCCAGGGCACCGGCGGCTCGAGCTCCGGCACTTCCGGCACTTCCGGCACGAATA CGCCGCAAGGCACGGGCTCCTCCTCGGGTATCAGCGGCACCTCGTCGTCCGGCACCAGCTCCGGCACCAGCGGCACCTCC TCGTCGGGCACCAGTTCCGGCACCAGCGGCACCTCGTCGTCGGGCAGCAGCGGCACCTCCTCGTCCGGCACCAGCGGCAC GAGTTCGAGCAACGCGGTAGGCAGCGTGGTCGCCAGTACCAGCAACGTGGTGTCGAGCGTCGGCACCACCGTGTCGGGCC TCGGCACGGTGATCGGCAGCCAGTCGGTGCCGGGCCTCGGCAGCGCGCCGACCCAGGCGCTCGGCAGCGTGGTGGGCAGT GTCGGCGGCGCGGTCAGCGCGCTCGGCAACGGCCTCGCGGGCGGGCTCGGCCAGCTCGGCGCGACCGCCAACCCGCTCGG CACCACGCTCGGCTCGACCGGCAACGTGGTGTCGCAGCTCGGCAACGCCGTGACCGGCACCGGCAACCTCGTGACGAGCC TGGGCAGCGGCCCGCTCACGCCGCTCGCCCCGGTCACCTCGACCGTCGGCGGCCTGGTCTCGACGCTCGGCACCACGGTG GCCAACGGCGGCGCGACGCTCGGCAACGTATTGAGCACCGGTCCCGTGCAGCAGATCACGCAGACCGTCAGCTCGGCGAT CACGCCGATCACCGCGGTGGTCGCCAACACGACGCAGACGGTCGGCAACGCGACCGGACTGGGCGCGCCGGTCAACACGC TGCTGGGCACGATCGGCGGCAGCCTGAACCAGGCCGGCTCGCTGATCGCCACGAAGGGCGGCGGCAACCCCGTCACCGCG GGCCTCGGCTCGACCGTGTCGGCCACCGGCAACACCGTCGCCTCGCTCGGCGGCCTGGTCACGGGCGGCAGCGGCGGCAA CCCGCTGGCACCGGTCAGCTCGGTGGTGGGCGGCCTCGCCAACACGCTCGGCGGCCTCGGCGGCACCAGCGGCGGCAGCG GCCCGCTGGCACCGGTCACCGGGCTCGTTTCGTCGGTTACCGGCGCGCTCGGCGGCGTCACGGGCGGGGCCGCAGGCGGT AGCGCGAGCGGCCTGCTGGCACCCGTCACGGGTCTCGCCTCGTCGGTCACCGGCGCACTCGGCGGCGCCACGGGCGGGGC CGCAGGCGGCGCCGCGGGCGGTGCGCTGGCACCCGTCACCGGGCTCGTCTCGTCGGTCACCGGCGCGCTCGGCGGCGCCA CGGGCGGGGCTGCAGGCGGCGCCGCGGGCGGCGCGCTGGCACCCGTCACCGGGCTCGTCTCGTCGGTCACCGGCGCACTC GGCGGCGCCACGGGAGGCGGCTCGGCGGGCGGCAGCGCCAGTGGCCTGCTCGCGCCGGTCACCGGCGTGCTGGCGGGCGT GACGGGCGCAGCGGGCGGTGCGGCCGCCGGCGCGACCAGCGCCGCCACCTCCGGCGCGGCCACGGTCGCGACCGGCCTGA GCGGGTCGAGCAACGGCGCCGCGACGAAAGGCTCGGGCGGCGGCCTGCTGGCACCCGTGACCTCGCTGGTGGGCGGGCTG CTCGGCGGCGGCAAGAAATAA
Upstream 100 bases:
>100_bases AGGCAGCGACTTTCGCATCGACTTTTCAATCGGGTGGCACGAGTGTTGCAGAGTGTATCTCGCGGTAACACAGATCACAC AACACCACTGCGAGGACGAC
Downstream 100 bases:
>100_bases CGGCGTTTCGTCGGTCAAGTCAATCAAATCGCGTCAGGAGACCCATCATGCAACCGATTCACCCGCTCTCTTCCCCGACC GCCTCGTCGGCGCTGCGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: Hemagglutinin-Related Transmembrane Protein; Triple Helix Repeat-Containing Collagen; Collagen Triple Helix Repeat; Hemagglutinin Transmembrane Protein
Number of amino acids: Translated: 566; Mature: 566
Protein sequence:
>566_residues MDTQTITQGMLRTTLIAATAAAMLSLSACGGSGSLSQGTGGSSSGTSGTSGTNTPQGTGSSSGISGTSSSGTSSGTSGTS SSGTSSGTSGTSSSGSSGTSSSGTSGTSSSNAVGSVVASTSNVVSSVGTTVSGLGTVIGSQSVPGLGSAPTQALGSVVGS VGGAVSALGNGLAGGLGQLGATANPLGTTLGSTGNVVSQLGNAVTGTGNLVTSLGSGPLTPLAPVTSTVGGLVSTLGTTV ANGGATLGNVLSTGPVQQITQTVSSAITPITAVVANTTQTVGNATGLGAPVNTLLGTIGGSLNQAGSLIATKGGGNPVTA GLGSTVSATGNTVASLGGLVTGGSGGNPLAPVSSVVGGLANTLGGLGGTSGGSGPLAPVTGLVSSVTGALGGVTGGAAGG SASGLLAPVTGLASSVTGALGGATGGAAGGAAGGALAPVTGLVSSVTGALGGATGGAAGGAAGGALAPVTGLVSSVTGAL GGATGGGSAGGSASGLLAPVTGVLAGVTGAAGGAAAGATSAATSGAATVATGLSGSSNGAATKGSGGGLLAPVTSLVGGL LGGGKK
Sequences:
>Translated_566_residues MDTQTITQGMLRTTLIAATAAAMLSLSACGGSGSLSQGTGGSSSGTSGTSGTNTPQGTGSSSGISGTSSSGTSSGTSGTS SSGTSSGTSGTSSSGSSGTSSSGTSGTSSSNAVGSVVASTSNVVSSVGTTVSGLGTVIGSQSVPGLGSAPTQALGSVVGS VGGAVSALGNGLAGGLGQLGATANPLGTTLGSTGNVVSQLGNAVTGTGNLVTSLGSGPLTPLAPVTSTVGGLVSTLGTTV ANGGATLGNVLSTGPVQQITQTVSSAITPITAVVANTTQTVGNATGLGAPVNTLLGTIGGSLNQAGSLIATKGGGNPVTA GLGSTVSATGNTVASLGGLVTGGSGGNPLAPVSSVVGGLANTLGGLGGTSGGSGPLAPVTGLVSSVTGALGGVTGGAAGG SASGLLAPVTGLASSVTGALGGATGGAAGGAAGGALAPVTGLVSSVTGALGGATGGAAGGAAGGALAPVTGLVSSVTGAL GGATGGGSAGGSASGLLAPVTGVLAGVTGAAGGAAAGATSAATSGAATVATGLSGSSNGAATKGSGGGLLAPVTSLVGGL LGGGKK >Mature_566_residues MDTQTITQGMLRTTLIAATAAAMLSLSACGGSGSLSQGTGGSSSGTSGTSGTNTPQGTGSSSGISGTSSSGTSSGTSGTS SSGTSSGTSGTSSSGSSGTSSSGTSGTSSSNAVGSVVASTSNVVSSVGTTVSGLGTVIGSQSVPGLGSAPTQALGSVVGS VGGAVSALGNGLAGGLGQLGATANPLGTTLGSTGNVVSQLGNAVTGTGNLVTSLGSGPLTPLAPVTSTVGGLVSTLGTTV ANGGATLGNVLSTGPVQQITQTVSSAITPITAVVANTTQTVGNATGLGAPVNTLLGTIGGSLNQAGSLIATKGGGNPVTA GLGSTVSATGNTVASLGGLVTGGSGGNPLAPVSSVVGGLANTLGGLGGTSGGSGPLAPVTGLVSSVTGALGGVTGGAAGG SASGLLAPVTGLASSVTGALGGATGGAAGGAAGGALAPVTGLVSSVTGALGGATGGAAGGAAGGALAPVTGLVSSVTGAL GGATGGGSAGGSASGLLAPVTGVLAGVTGAAGGAAAGATSAATSGAATVATGLSGSSNGAATKGSGGGLLAPVTSLVGGL LGGGKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48997; Mature: 48997
Theoretical pI: Translated: 10.80; Mature: 10.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTQTITQGMLRTTLIAATAAAMLSLSACGGSGSLSQGTGGSSSGTSGTSGTNTPQGTGS CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSGISGTSSSGTSSGTSGTSSSGTSSGTSGTSSSGSSGTSSSGTSGTSSSNAVGSVVAST CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH SNVVSSVGTTVSGLGTVIGSQSVPGLGSAPTQALGSVVGSVGGAVSALGNGLAGGLGQLG HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCHHHCC ATANPLGTTLGSTGNVVSQLGNAVTGTGNLVTSLGSGPLTPLAPVTSTVGGLVSTLGTTV CCCCCHHHHCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH ANGGATLGNVLSTGPVQQITQTVSSAITPITAVVANTTQTVGNATGLGAPVNTLLGTIGG CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC SLNQAGSLIATKGGGNPVTAGLGSTVSATGNTVASLGGLVTGGSGGNPLAPVSSVVGGLA CHHHCCCEEEECCCCCCEECCCCCCCCCCCCHHHHHCCEEECCCCCCCCHHHHHHHHHHH NTLGGLGGTSGGSGPLAPVTGLVSSVTGALGGVTGGAAGGSASGLLAPVTGLASSVTGAL HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH GGATGGAAGGAAGGALAPVTGLVSSVTGALGGATGGAAGGAAGGALAPVTGLVSSVTGAL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH GGATGGGSAGGSASGLLAPVTGVLAGVTGAAGGAAAGATSAATSGAATVATGLSGSSNGA CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCCC ATKGSGGGLLAPVTSLVGGLLGGGKK CCCCCCCCHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MDTQTITQGMLRTTLIAATAAAMLSLSACGGSGSLSQGTGGSSSGTSGTSGTNTPQGTGS CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SSGISGTSSSGTSSGTSGTSSSGTSSGTSGTSSSGSSGTSSSGTSGTSSSNAVGSVVAST CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH SNVVSSVGTTVSGLGTVIGSQSVPGLGSAPTQALGSVVGSVGGAVSALGNGLAGGLGQLG HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCHHHCC ATANPLGTTLGSTGNVVSQLGNAVTGTGNLVTSLGSGPLTPLAPVTSTVGGLVSTLGTTV CCCCCHHHHCCCCCHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH ANGGATLGNVLSTGPVQQITQTVSSAITPITAVVANTTQTVGNATGLGAPVNTLLGTIGG CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCC SLNQAGSLIATKGGGNPVTAGLGSTVSATGNTVASLGGLVTGGSGGNPLAPVSSVVGGLA CHHHCCCEEEECCCCCCEECCCCCCCCCCCCHHHHHCCEEECCCCCCCCHHHHHHHHHHH NTLGGLGGTSGGSGPLAPVTGLVSSVTGALGGVTGGAAGGSASGLLAPVTGLASSVTGAL HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH GGATGGAAGGAAGGALAPVTGLVSSVTGALGGATGGAAGGAAGGALAPVTGLVSSVTGAL CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH GGATGGGSAGGSASGLLAPVTGVLAGVTGAAGGAAAGATSAATSGAATVATGLSGSSNGA CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCHHHHCCCCCCCCCC ATKGSGGGLLAPVTSLVGGLLGGGKK CCCCCCCCHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA