| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is yurO [H]
Identifier: 238027374
GI number: 238027374
Start: 1942662
End: 1943915
Strand: Direct
Name: yurO [H]
Synonym: bglu_1g17690
Alternate gene names: 238027374
Gene position: 1942662-1943915 (Clockwise)
Preceding gene: 238027373
Following gene: 238027375
Centisome position: 49.73
GC content: 66.91
Gene sequence:
>1254_bases ATGAACCTTCAACCCCGCTTCCGGCGCGGCCTCGCCGCGCTCGCCGTGGCCGCGCTGACCGGCCTGTCGGCGTCGGCCGC GCTGGCCGGCACGCTGAGCGTCAACATCGCGTACAAGGGCGCGAGCCAGCGTGCGGTGTGGACCCAGGTGGTGGACCAGT TCAAGCAATCGCACCCCGGCACCGACGTCAAGCTCGCGTTCGTCGACGAGGAAGCCTACAAGGTGCAGTTGCCGAACTGG CTGACCACGGCGCCGCCCGACATCATCAACTGGCACGACGGCGAGCGCATGGCCTACTACGCCAAGCGCGGGCTGTTCGA GGACCTGTCCGCCGACTGGCAGAAGAACCACTGGGACACGATGTACGCCTCGACGAAGGAGGCCTCGTCGTACCAGGGCA AGCCCTATGCGGCGCCCACCGTCTACTACGCGTGGGGGATGTTCTATCGCAAGAACCTGTTCAAGAAGGTCGGCATCACC GCCGAGCCGACCACCTGGGCCGAGTTCCTCGACGACTGCAAGAAGCTCAAGGCCGCCGGCATCACGCCGATCGCGGTGGG CGGCCGCGATGCGTGGACCCTGGCCGGCTGGTTCGACTACCTGGACCTGCGCCTGAACGGCAACGCGTTCCACCAGCAGC TGATGGCCGGCCAGATCCCCTACACCGACGCGCGCGTGAAGAAGGTCTACACCACCTGGAAGCAGCTGATCGACGCGGGC TACTTCATCGACAACGCGCTGTCCTACGATCTCGACGCGGCGCAGCCGTTCCTGTTCCAGGACAAGGCCGCGATGATGCT GATGGGCACCTTCATCACCGGCGGCTTCACGCCGGCGGTGCGGCAGGACATGGGCTTCTTCCGCTTCCCGGTGATCGACG CGAACGTGCCGATCGCCGAGGACGGCCCGGTGGAATCGCTGCACATCCCCGCCAAGGCCAAGAACAAGGCGGACGCGCAT GCGTTCCTCGCGTTCGTCGAGACGCCGGCCATCGGCGCGCAGCTGGCCAAGGGGCTCGGCTCGCTGTCGGCCAACAGCCG CTCGCCGGAGCCCGACGACGCGATCTCGAGGATTGCCTTCCACCTGCTGGCCGACACCAAGGGCGGCATCGCGCAGTTCT ACGATCGCGACATGACCAAGGAAATGGCCGACGAGGGCATGAAGGGCATGCAGCAGTTCCTCGCCGATCCGGGCAAGCTC GACGCGGTGCTCGCGCAGCTCGAGGCCGCGCGCCAGCGCATCTACCGGAAGTGA
Upstream 100 bases:
>100_bases CGCACCGCGGCCGGCTGAGCCCGCGCGGCGCGTTCGCGGGCAGATTTCGTTGTTTCGCCATTCCGCAGTTCCGACAACAA CCGCAACCAGGAGACAGCAG
Downstream 100 bases:
>100_bases TGCGGGAACCGAACCCGCAGTGAACTGGAAGCGAGCGGGGCCGGCGGCGGCACCGGGCGGGCCGCAGGCCGCCCGTGCCG CCGCCCCCCGCGACCATCAA
Product: family 1 extracellular solute-binding protein
Products: ADP; phosphate; maltose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MNLQPRFRRGLAALAVAALTGLSASAALAGTLSVNIAYKGASQRAVWTQVVDQFKQSHPGTDVKLAFVDEEAYKVQLPNW LTTAPPDIINWHDGERMAYYAKRGLFEDLSADWQKNHWDTMYASTKEASSYQGKPYAAPTVYYAWGMFYRKNLFKKVGIT AEPTTWAEFLDDCKKLKAAGITPIAVGGRDAWTLAGWFDYLDLRLNGNAFHQQLMAGQIPYTDARVKKVYTTWKQLIDAG YFIDNALSYDLDAAQPFLFQDKAAMMLMGTFITGGFTPAVRQDMGFFRFPVIDANVPIAEDGPVESLHIPAKAKNKADAH AFLAFVETPAIGAQLAKGLGSLSANSRSPEPDDAISRIAFHLLADTKGGIAQFYDRDMTKEMADEGMKGMQQFLADPGKL DAVLAQLEAARQRIYRK
Sequences:
>Translated_417_residues MNLQPRFRRGLAALAVAALTGLSASAALAGTLSVNIAYKGASQRAVWTQVVDQFKQSHPGTDVKLAFVDEEAYKVQLPNW LTTAPPDIINWHDGERMAYYAKRGLFEDLSADWQKNHWDTMYASTKEASSYQGKPYAAPTVYYAWGMFYRKNLFKKVGIT AEPTTWAEFLDDCKKLKAAGITPIAVGGRDAWTLAGWFDYLDLRLNGNAFHQQLMAGQIPYTDARVKKVYTTWKQLIDAG YFIDNALSYDLDAAQPFLFQDKAAMMLMGTFITGGFTPAVRQDMGFFRFPVIDANVPIAEDGPVESLHIPAKAKNKADAH AFLAFVETPAIGAQLAKGLGSLSANSRSPEPDDAISRIAFHLLADTKGGIAQFYDRDMTKEMADEGMKGMQQFLADPGKL DAVLAQLEAARQRIYRK >Mature_417_residues MNLQPRFRRGLAALAVAALTGLSASAALAGTLSVNIAYKGASQRAVWTQVVDQFKQSHPGTDVKLAFVDEEAYKVQLPNW LTTAPPDIINWHDGERMAYYAKRGLFEDLSADWQKNHWDTMYASTKEASSYQGKPYAAPTVYYAWGMFYRKNLFKKVGIT AEPTTWAEFLDDCKKLKAAGITPIAVGGRDAWTLAGWFDYLDLRLNGNAFHQQLMAGQIPYTDARVKKVYTTWKQLIDAG YFIDNALSYDLDAAQPFLFQDKAAMMLMGTFITGGFTPAVRQDMGFFRFPVIDANVPIAEDGPVESLHIPAKAKNKADAH AFLAFVETPAIGAQLAKGLGSLSANSRSPEPDDAISRIAFHLLADTKGGIAQFYDRDMTKEMADEGMKGMQQFLADPGKL DAVLAQLEAARQRIYRK
Specific function: Probably part of the binding-protein-dependent transport system yurMNO [H]
COG id: COG1653
COG function: function code G; ABC-type sugar transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: 660 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 720 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 240 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 46142; Mature: 46142
Theoretical pI: Translated: 7.75; Mature: 7.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLQPRFRRGLAALAVAALTGLSASAALAGTLSVNIAYKGASQRAVWTQVVDQFKQSHPG CCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCC TDVKLAFVDEEAYKVQLPNWLTTAPPDIINWHDGERMAYYAKRGLFEDLSADWQKNHWDT CCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCCHHCCCCHH MYASTKEASSYQGKPYAAPTVYYAWGMFYRKNLFKKVGITAEPTTWAEFLDDCKKLKAAG HHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC ITPIAVGGRDAWTLAGWFDYLDLRLNGNAFHQQLMAGQIPYTDARVKKVYTTWKQLIDAG CCEEEECCCCCEEHHHHEEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC YFIDNALSYDLDAAQPFLFQDKAAMMLMGTFITGGFTPAVRQDMGFFRFPVIDANVPIAE HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEECEEEECCCCCCC DGPVESLHIPAKAKNKADAHAFLAFVETPAIGAQLAKGLGSLSANSRSPEPDDAISRIAF CCCCCEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH HLLADTKGGIAQFYDRDMTKEMADEGMKGMQQFLADPGKLDAVLAQLEAARQRIYRK HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNLQPRFRRGLAALAVAALTGLSASAALAGTLSVNIAYKGASQRAVWTQVVDQFKQSHPG CCCCHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCC TDVKLAFVDEEAYKVQLPNWLTTAPPDIINWHDGERMAYYAKRGLFEDLSADWQKNHWDT CCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCCHHCCCCHH MYASTKEASSYQGKPYAAPTVYYAWGMFYRKNLFKKVGITAEPTTWAEFLDDCKKLKAAG HHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC ITPIAVGGRDAWTLAGWFDYLDLRLNGNAFHQQLMAGQIPYTDARVKKVYTTWKQLIDAG CCEEEECCCCCEEHHHHEEEEEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC YFIDNALSYDLDAAQPFLFQDKAAMMLMGTFITGGFTPAVRQDMGFFRFPVIDANVPIAE HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEECEEEECCCCCCC DGPVESLHIPAKAKNKADAHAFLAFVETPAIGAQLAKGLGSLSANSRSPEPDDAISRIAF CCCCCEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH HLLADTKGGIAQFYDRDMTKEMADEGMKGMQQFLADPGKLDAVLAQLEAARQRIYRK HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; maltose [Periplasm]; H2O [C]
Specific reaction: ATP + maltose [Periplasm] + H2O = ADP + phosphate + maltose [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]