Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is 238027373

Identifier: 238027373

GI number: 238027373

Start: 1940576

End: 1942579

Strand: Direct

Name: 238027373

Synonym: bglu_1g17680

Alternate gene names: NA

Gene position: 1940576-1942579 (Clockwise)

Preceding gene: 238027372

Following gene: 238027374

Centisome position: 49.68

GC content: 71.86

Gene sequence:

>2004_bases
ATGCGCCTTGGAGTCTGTTACTACCCCGAACACTGGCCGGAAGCCATGTGGAACGACGATGCCGCGCGCATGAAGGCGCT
CGGCATCGAGCAGGTGCGGATCGCCGAATTCGCCTGGAGCCGGATCGAGCCGCAGCCGGGCGAATACGACTGGGGCTGGC
TCGACCGCGCGATCGAGGTGCTCGGCGCGGCCGGCCTGCAGGTCGTGATGTGCACGCCCACCGCGACGCCGCCGAAGTGG
CTGGTCGACCGGCATCCCGAGATCCTGCCGGTCGGCGCCGACGGCCGGCCTCGCGCGTTCGGCTCGCGCCGTCATTACGA
TTTCTCGTCGCCGAGCTACTTCGAGGCGTCGCAGCGCATCTGCGAGGCCGTGGCGCGCCGCTACGGCGCCCATCCGGCCG
TGGCCTACTGGCAGACCGACAACGAATATGGCTGCCACCAGACCGTGGTCAGCTACTCGCCGGCCGCGCAGGCACGCTTT
CGCGACTGGCTGCGCGCGCGCTACGGCACCATCGAGGCGCTCAACGCGGCCTGGGGCACGGTGTTCTGGAGCATGGAATA
CCGCAGCTTCGACGAGATCGACGCGCCGGTCGGCACGGTCACCGAGGCGCACCCGTCGCATCGGCTCGACTATCGCCGCT
TCGCCTCCGACGAGGTGCGGCGCTACAACCGGATGCAGGTCGAGATCCTCCGCGCGCATTCGCCGGGCCGGCCGATCGCG
CACAACTTCATGCAGCTGTTCACCGAGTTCGACCATTATCCGGTGGCGGCCGACCTCGACGTGGCGGGCTGGGACAGCTA
TCCGCTCGGCGCGCTCGAGGAGCAGTGGTACGCGCCCGAGGTGAAGGCGCGCTACCTGCGCACCGGGCACCCCGATTTCG
CGTCGTTCAACCACGACCTCTACCGCGGCATGTCGCGGCTGCCGTTCTGGGTGATGGAGCAGCAGCCGGGGCCGGTGAAC
TGGGCGCACTGGAACCCGGCGCCGCTGCCGGGCATGGTGCGGCTCTGGAGCTGGGAGGCGTTCGCCCACGGCGCCGGCTG
CGTCTCGTACTTCCGCTGGCGCCAGGCCCCGTTCGCGCAGGAGCAGATGCACGCGGGGCTGAACACGCCCGACAACCGGC
TCGACCTCGGCGGCAGCGAGGCCGCCCAGGTGGCCGGCGAGTTGCGCGCGCTGCTCGCCGACGCCGAGGCCGGGGCCACC
GCGCCGGTGCGCGCCAGCGTGGCACTGCTGTTCGACTACACCGCGAAATGGCTGTTCGAGGTGCATCCGCAAGGCGCCGA
TTTCCACTATCCCCGCTTCGTCGTGGAGTACTACTCGGCGCTGCGCTCGCTCGGCTTCGACGTGGACGTGGTGGCCCCGG
ACGCGCCGCTCGACGGCTACCGGCTGGTGGTGGTGCCGCCGCTGCCGATCGTCTCCGAGGCGCTGGCGCAGCGGCTCGCC
AGCTGCGGCGCGCAGGTCGTGCTCGGCCCGCGCACCGGCTCGAAGACGCCCGATCTGCAGATTCCCGCGAACCTGCCGCC
CGGCCCGCTCGCGGCGCATCTGCCGATCCGCGTCTGGCGCGTGGAGTCGCTGCGGCCGACGCTCGCCGAGACCGTGCAGG
TTGCCGCCGCGCCCGACGCCGCGGCCTTCGAGACGCCGGCGCGCCACTGGCGCGATCTCGTCGAGATCGACCCGGCCCAG
GCGGCGTCGGTCGAGATCCGCGCACGCTTTCACGACGGTCATCCGGCCTATCTGCGCCACGGCGTGTTCCATTATTTCGC
GAGCCTGTTCGACGAGGCCGGCACGGCGACGCTGCTGGCGCGCGTCGCGCGCGAGGCGGGCCTCGCGCCCGTGCCGCTCG
GCGACGCGGTGCGCGTGAGCCGGCGCGGCGGGCTGACCTGGGTGTTCAACTACGGCCCCGAGCCCTACCGGATCGACGCG
GCGATCCCCGATGCGGCGATCGTGGTCGGCGCGCGCTGCATCGAGGCCGCCGGTGTCGCCGCCTATCGCACCGCGGCCGG
CTGA

Upstream 100 bases:

>100_bases
GCCTGAGGGCAGCGCGCCGAACCGTTTATCGAAGCGCGCGCCCGCCGCCCGGGCGGCCCGCCACCCACGCGCCCCACCCC
CAACGATCGAGGATCGACCG

Downstream 100 bases:

>100_bases
GCCCGCGCGGCGCGTTCGCGGGCAGATTTCGTTGTTTCGCCATTCCGCAGTTCCGACAACAACCGCAACCAGGAGACAGC
AGATGAACCTTCAACCCCGC

Product: glycoside hydrolase, family 42-like protein

Products: NA

Alternate protein names: Beta-gal; Lactase [H]

Number of amino acids: Translated: 667; Mature: 667

Protein sequence:

>667_residues
MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEVLGAAGLQVVMCTPTATPPKW
LVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRICEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARF
RDWLRARYGTIEALNAAWGTVFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA
HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDLYRGMSRLPFWVMEQQPGPVN
WAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQEQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGAT
APVRASVALLFDYTAKWLFEVHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA
SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDAAAFETPARHWRDLVEIDPAQ
AASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLARVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDA
AIPDAAIVVGARCIEAAGVAAYRTAAG

Sequences:

>Translated_667_residues
MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEVLGAAGLQVVMCTPTATPPKW
LVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRICEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARF
RDWLRARYGTIEALNAAWGTVFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA
HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDLYRGMSRLPFWVMEQQPGPVN
WAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQEQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGAT
APVRASVALLFDYTAKWLFEVHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA
SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDAAAFETPARHWRDLVEIDPAQ
AASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLARVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDA
AIPDAAIVVGARCIEAAGVAAYRTAAG
>Mature_667_residues
MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEVLGAAGLQVVMCTPTATPPKW
LVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRICEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARF
RDWLRARYGTIEALNAAWGTVFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA
HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDLYRGMSRLPFWVMEQQPGPVN
WAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQEQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGAT
APVRASVALLFDYTAKWLFEVHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA
SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDAAAFETPARHWRDLVEIDPAQ
AASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLARVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDA
AIPDAAIVVGARCIEAAGVAAYRTAAG

Specific function: Unknown

COG id: COG1874

COG function: function code G; Beta-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 42 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013739
- InterPro:   IPR013738
- InterPro:   IPR013780
- InterPro:   IPR003476
- InterPro:   IPR013529
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02449 Glyco_hydro_42; PF08533 Glyco_hydro_42C; PF08532 Glyco_hydro_42M [H]

EC number: =3.2.1.23 [H]

Molecular weight: Translated: 74315; Mature: 74315

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEV
CCCEEEECCCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LGAAGLQVVMCTPTATPPKWLVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRI
HCCCCCEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH
CEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARFRDWLRARYGTIEALNAAWGT
HHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCE
VFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA
EEEEECCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDL
HHHHHHHHHCCCCCCEECCEECCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHCCHHH
YRGMSRLPFWVMEQQPGPVNWAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQ
HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHCCCCHH
EQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGATAPVRASVALLFDYTAKWLFE
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEE
VHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA
ECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHH
SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDA
HCCCEEEEECCCCCCCCCEEECCCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHCCCCC
AAFETPARHWRDLVEIDPAQAASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLA
HHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
RVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDAAIPDAAIVVGARCIEAAGVA
HHHHHCCCCCCCCCCCCEEECCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHCCCH
AYRTAAG
HHHCCCC
>Mature Secondary Structure
MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEV
CCCEEEECCCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LGAAGLQVVMCTPTATPPKWLVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRI
HCCCCCEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH
CEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARFRDWLRARYGTIEALNAAWGT
HHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCE
VFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA
EEEEECCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH
HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDL
HHHHHHHHHCCCCCCEECCEECCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHCCHHH
YRGMSRLPFWVMEQQPGPVNWAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQ
HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHCCCCHH
EQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGATAPVRASVALLFDYTAKWLFE
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEE
VHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA
ECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHH
SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDA
HCCCEEEEECCCCCCCCCEEECCCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHCCCCC
AAFETPARHWRDLVEIDPAQAASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLA
HHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
RVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDAAIPDAAIVVGARCIEAAGVA
HHHHHCCCCCCCCCCCCEEECCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHCCCH
AYRTAAG
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9757561; 12215416 [H]