| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027373
Identifier: 238027373
GI number: 238027373
Start: 1940576
End: 1942579
Strand: Direct
Name: 238027373
Synonym: bglu_1g17680
Alternate gene names: NA
Gene position: 1940576-1942579 (Clockwise)
Preceding gene: 238027372
Following gene: 238027374
Centisome position: 49.68
GC content: 71.86
Gene sequence:
>2004_bases ATGCGCCTTGGAGTCTGTTACTACCCCGAACACTGGCCGGAAGCCATGTGGAACGACGATGCCGCGCGCATGAAGGCGCT CGGCATCGAGCAGGTGCGGATCGCCGAATTCGCCTGGAGCCGGATCGAGCCGCAGCCGGGCGAATACGACTGGGGCTGGC TCGACCGCGCGATCGAGGTGCTCGGCGCGGCCGGCCTGCAGGTCGTGATGTGCACGCCCACCGCGACGCCGCCGAAGTGG CTGGTCGACCGGCATCCCGAGATCCTGCCGGTCGGCGCCGACGGCCGGCCTCGCGCGTTCGGCTCGCGCCGTCATTACGA TTTCTCGTCGCCGAGCTACTTCGAGGCGTCGCAGCGCATCTGCGAGGCCGTGGCGCGCCGCTACGGCGCCCATCCGGCCG TGGCCTACTGGCAGACCGACAACGAATATGGCTGCCACCAGACCGTGGTCAGCTACTCGCCGGCCGCGCAGGCACGCTTT CGCGACTGGCTGCGCGCGCGCTACGGCACCATCGAGGCGCTCAACGCGGCCTGGGGCACGGTGTTCTGGAGCATGGAATA CCGCAGCTTCGACGAGATCGACGCGCCGGTCGGCACGGTCACCGAGGCGCACCCGTCGCATCGGCTCGACTATCGCCGCT TCGCCTCCGACGAGGTGCGGCGCTACAACCGGATGCAGGTCGAGATCCTCCGCGCGCATTCGCCGGGCCGGCCGATCGCG CACAACTTCATGCAGCTGTTCACCGAGTTCGACCATTATCCGGTGGCGGCCGACCTCGACGTGGCGGGCTGGGACAGCTA TCCGCTCGGCGCGCTCGAGGAGCAGTGGTACGCGCCCGAGGTGAAGGCGCGCTACCTGCGCACCGGGCACCCCGATTTCG CGTCGTTCAACCACGACCTCTACCGCGGCATGTCGCGGCTGCCGTTCTGGGTGATGGAGCAGCAGCCGGGGCCGGTGAAC TGGGCGCACTGGAACCCGGCGCCGCTGCCGGGCATGGTGCGGCTCTGGAGCTGGGAGGCGTTCGCCCACGGCGCCGGCTG CGTCTCGTACTTCCGCTGGCGCCAGGCCCCGTTCGCGCAGGAGCAGATGCACGCGGGGCTGAACACGCCCGACAACCGGC TCGACCTCGGCGGCAGCGAGGCCGCCCAGGTGGCCGGCGAGTTGCGCGCGCTGCTCGCCGACGCCGAGGCCGGGGCCACC GCGCCGGTGCGCGCCAGCGTGGCACTGCTGTTCGACTACACCGCGAAATGGCTGTTCGAGGTGCATCCGCAAGGCGCCGA TTTCCACTATCCCCGCTTCGTCGTGGAGTACTACTCGGCGCTGCGCTCGCTCGGCTTCGACGTGGACGTGGTGGCCCCGG ACGCGCCGCTCGACGGCTACCGGCTGGTGGTGGTGCCGCCGCTGCCGATCGTCTCCGAGGCGCTGGCGCAGCGGCTCGCC AGCTGCGGCGCGCAGGTCGTGCTCGGCCCGCGCACCGGCTCGAAGACGCCCGATCTGCAGATTCCCGCGAACCTGCCGCC CGGCCCGCTCGCGGCGCATCTGCCGATCCGCGTCTGGCGCGTGGAGTCGCTGCGGCCGACGCTCGCCGAGACCGTGCAGG TTGCCGCCGCGCCCGACGCCGCGGCCTTCGAGACGCCGGCGCGCCACTGGCGCGATCTCGTCGAGATCGACCCGGCCCAG GCGGCGTCGGTCGAGATCCGCGCACGCTTTCACGACGGTCATCCGGCCTATCTGCGCCACGGCGTGTTCCATTATTTCGC GAGCCTGTTCGACGAGGCCGGCACGGCGACGCTGCTGGCGCGCGTCGCGCGCGAGGCGGGCCTCGCGCCCGTGCCGCTCG GCGACGCGGTGCGCGTGAGCCGGCGCGGCGGGCTGACCTGGGTGTTCAACTACGGCCCCGAGCCCTACCGGATCGACGCG GCGATCCCCGATGCGGCGATCGTGGTCGGCGCGCGCTGCATCGAGGCCGCCGGTGTCGCCGCCTATCGCACCGCGGCCGG CTGA
Upstream 100 bases:
>100_bases GCCTGAGGGCAGCGCGCCGAACCGTTTATCGAAGCGCGCGCCCGCCGCCCGGGCGGCCCGCCACCCACGCGCCCCACCCC CAACGATCGAGGATCGACCG
Downstream 100 bases:
>100_bases GCCCGCGCGGCGCGTTCGCGGGCAGATTTCGTTGTTTCGCCATTCCGCAGTTCCGACAACAACCGCAACCAGGAGACAGC AGATGAACCTTCAACCCCGC
Product: glycoside hydrolase, family 42-like protein
Products: NA
Alternate protein names: Beta-gal; Lactase [H]
Number of amino acids: Translated: 667; Mature: 667
Protein sequence:
>667_residues MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEVLGAAGLQVVMCTPTATPPKW LVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRICEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARF RDWLRARYGTIEALNAAWGTVFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDLYRGMSRLPFWVMEQQPGPVN WAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQEQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGAT APVRASVALLFDYTAKWLFEVHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDAAAFETPARHWRDLVEIDPAQ AASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLARVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDA AIPDAAIVVGARCIEAAGVAAYRTAAG
Sequences:
>Translated_667_residues MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEVLGAAGLQVVMCTPTATPPKW LVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRICEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARF RDWLRARYGTIEALNAAWGTVFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDLYRGMSRLPFWVMEQQPGPVN WAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQEQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGAT APVRASVALLFDYTAKWLFEVHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDAAAFETPARHWRDLVEIDPAQ AASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLARVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDA AIPDAAIVVGARCIEAAGVAAYRTAAG >Mature_667_residues MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEVLGAAGLQVVMCTPTATPPKW LVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRICEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARF RDWLRARYGTIEALNAAWGTVFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDLYRGMSRLPFWVMEQQPGPVN WAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQEQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGAT APVRASVALLFDYTAKWLFEVHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDAAAFETPARHWRDLVEIDPAQ AASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLARVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDA AIPDAAIVVGARCIEAAGVAAYRTAAG
Specific function: Unknown
COG id: COG1874
COG function: function code G; Beta-galactosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 42 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013739 - InterPro: IPR013738 - InterPro: IPR013780 - InterPro: IPR003476 - InterPro: IPR013529 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02449 Glyco_hydro_42; PF08533 Glyco_hydro_42C; PF08532 Glyco_hydro_42M [H]
EC number: =3.2.1.23 [H]
Molecular weight: Translated: 74315; Mature: 74315
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEV CCCEEEECCCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LGAAGLQVVMCTPTATPPKWLVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRI HCCCCCEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH CEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARFRDWLRARYGTIEALNAAWGT HHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCE VFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA EEEEECCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDL HHHHHHHHHCCCCCCEECCEECCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHCCHHH YRGMSRLPFWVMEQQPGPVNWAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQ HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHCCCCHH EQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGATAPVRASVALLFDYTAKWLFE HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEE VHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA ECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHH SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDA HCCCEEEEECCCCCCCCCEEECCCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHCCCCC AAFETPARHWRDLVEIDPAQAASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLA HHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHH RVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDAAIPDAAIVVGARCIEAAGVA HHHHHCCCCCCCCCCCCEEECCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHCCCH AYRTAAG HHHCCCC >Mature Secondary Structure MRLGVCYYPEHWPEAMWNDDAARMKALGIEQVRIAEFAWSRIEPQPGEYDWGWLDRAIEV CCCEEEECCCCCCHHHCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH LGAAGLQVVMCTPTATPPKWLVDRHPEILPVGADGRPRAFGSRRHYDFSSPSYFEASQRI HCCCCCEEEEECCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHH CEAVARRYGAHPAVAYWQTDNEYGCHQTVVSYSPAAQARFRDWLRARYGTIEALNAAWGT HHHHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCE VFWSMEYRSFDEIDAPVGTVTEAHPSHRLDYRRFASDEVRRYNRMQVEILRAHSPGRPIA EEEEECCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHH HNFMQLFTEFDHYPVAADLDVAGWDSYPLGALEEQWYAPEVKARYLRTGHPDFASFNHDL HHHHHHHHHCCCCCCEECCEECCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHCCHHH YRGMSRLPFWVMEQQPGPVNWAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQAPFAQ HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHHCCCCHH EQMHAGLNTPDNRLDLGGSEAAQVAGELRALLADAEAGATAPVRASVALLFDYTAKWLFE HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEE VHPQGADFHYPRFVVEYYSALRSLGFDVDVVAPDAPLDGYRLVVVPPLPIVSEALAQRLA ECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHH SCGAQVVLGPRTGSKTPDLQIPANLPPGPLAAHLPIRVWRVESLRPTLAETVQVAAAPDA HCCCEEEEECCCCCCCCCEEECCCCCCCCCEECCCEEEEEECCCCHHHHHHHHHHCCCCC AAFETPARHWRDLVEIDPAQAASVEIRARFHDGHPAYLRHGVFHYFASLFDEAGTATLLA HHHCCHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHH RVAREAGLAPVPLGDAVRVSRRGGLTWVFNYGPEPYRIDAAIPDAAIVVGARCIEAAGVA HHHHHCCCCCCCCCCCCEEECCCCEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHCCCH AYRTAAG HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9757561; 12215416 [H]