| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is actII-2 [H]
Identifier: 238027281
GI number: 238027281
Start: 1835296
End: 1836777
Strand: Direct
Name: actII-2 [H]
Synonym: bglu_1g16680
Alternate gene names: 238027281
Gene position: 1835296-1836777 (Clockwise)
Preceding gene: 238027280
Following gene: 238027282
Centisome position: 46.98
GC content: 74.16
Gene sequence:
>1482_bases ATGTCGAATTCCTCCACCCTCGCGCCGGGCGCCGCCGCCCCGGTCCGGCCGCATCGCCGCATGCTGCCGCTGCTGCTGAT CGGGCAGGGCATGGCGGCGATGGATACCTCGATCGTCAACGTCGCGGCGCCCGCGCTGCGCGCCGACCTGGGCATCTCGG GCGCGCTGCTGCAGCTCGTGGTGGCCGGCTACATCCTCGCCTACGCCGTGTTCCTGATCACCGGCGCGCGCCTCGGCGAC GATCACGGCTACCGGCGCCTGTTCATCCACGGCCTGGCGATCTTCACGATCTCGTCGCTGGCCTGCGGCCTGGCGCCCGA CACCTGGCTGCTGATCGCTGGGCGCCTCGCGCAGGGCGTGGGCGCGGCGATGCTGGTGCCGCAGGTGATGTCGCTGATCC AGCGCAGCTACGAGGGCCGGGAGCGGGCCCGCGCGATCGGCTACTACTCGATGATCCTCGGGCTCGGCTCCACGGCCGGC CAGGCGCTCGGCGGGCTGATCATCACCGCGAACCTGGGCGGCCTGTCGTGGCGCCCGGCGTTCCTCATCAACGTGCCGAT CGGCATCGTGCTCTTGCTGTACGCGCCCGCGGTGCTGCCGGACCTGGCCGGCGCCAAGCGGCGCCGGCTCGATCTGGCCG GCGTGGCGCTGCTGACGGCGGCGATGCTGCTGGTGGTGGTGCCGCTCACGTTCGGCCACGACGCCGGCTGGGCCGCCTGG GTGTGGGTCGCGCTGGCCGCCGGGGTGGCCGGGCTGGCGGTGTTCCTGCGCTTCGAGCACGGCCTCGCGCGGCGCGGCGC GGCCCCGCTGCTGGATCTGGACGCGCTGCTCGCGCCCGGCATCCGTCCCGGCCTGGCGGTGGTGTCGATCGGCTTCATCG GCTACGGCGGCTGGCTGTTCGCCTGCGCGCTGTACCTGCAGACCGGGCTGGGCGATTCGCCGATGATCTCCGGCTTCGTG TTCGCGGCCTACGCATTCGGCTTCGGCATCTCGAACGTGAGCTGGTCGAAGCTGCCGGCGCGGCTGCTGCGCTTCACGCC CGCCGCGGCGCTGGCCGTGATGGTGGTGGCCAACGCCGCGTTCGGCACCGGCGCGCGCCAGTTCGGCTGGCTGGCCGCGC TGATGGTGCCGCTGCTGTTCCTGGCCGGCGCGAGCCACGGCCTCACGTTCGGCACCACCGTCAGCCAGATGACGCAGCGC ACCGCGGCGCGCCATGCGCCCGCGTTGAGCGGCCTCGTCTCCACCTCGGTGCAGCTGTCGATCGTGATCGGCGTGGCCGC GCTCGGCTCGGTCTATCTGGCCATCGCACGGCCCGGCGACGTGCCGCGCTCGGCGCAGGCCATCTCGAGCGTCACCTTCG CGATCGCGGCGCTGGCGCTGGTGGCGATCGCCTGCTCGCTGCGGCTCGCGACGATGCGGGCGGCGCCGCCGGCCGCCGTG CCCGCCGCGCGGCCCGGCGGCGACGCGCCGCGGCCGCACTGA
Upstream 100 bases:
>100_bases CAAGCGGGCGGCACTGCCCGACGCCGCGCGCTGGAAGGACGTCGAGGGCAAGCTCGAACACCTGAAGCGCGACGTGATCG CGTAAGGCGAGGGAGCCGGC
Downstream 100 bases:
>100_bases GCGCGAGATGCGCCGCGCGCTCCGCTACCGGATGCAACCCGATACCGCGAGGGTCGCCACGACCGTCGCGGCCACTCCGA CCACCACGAGGATTCCGACT
Product: major facilitator superfamily protein
Products: Proton [Cytoplasm]; drug [Periplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MSNSSTLAPGAAAPVRPHRRMLPLLLIGQGMAAMDTSIVNVAAPALRADLGISGALLQLVVAGYILAYAVFLITGARLGD DHGYRRLFIHGLAIFTISSLACGLAPDTWLLIAGRLAQGVGAAMLVPQVMSLIQRSYEGRERARAIGYYSMILGLGSTAG QALGGLIITANLGGLSWRPAFLINVPIGIVLLLYAPAVLPDLAGAKRRRLDLAGVALLTAAMLLVVVPLTFGHDAGWAAW VWVALAAGVAGLAVFLRFEHGLARRGAAPLLDLDALLAPGIRPGLAVVSIGFIGYGGWLFACALYLQTGLGDSPMISGFV FAAYAFGFGISNVSWSKLPARLLRFTPAAALAVMVVANAAFGTGARQFGWLAALMVPLLFLAGASHGLTFGTTVSQMTQR TAARHAPALSGLVSTSVQLSIVIGVAALGSVYLAIARPGDVPRSAQAISSVTFAIAALALVAIACSLRLATMRAAPPAAV PAARPGGDAPRPH
Sequences:
>Translated_493_residues MSNSSTLAPGAAAPVRPHRRMLPLLLIGQGMAAMDTSIVNVAAPALRADLGISGALLQLVVAGYILAYAVFLITGARLGD DHGYRRLFIHGLAIFTISSLACGLAPDTWLLIAGRLAQGVGAAMLVPQVMSLIQRSYEGRERARAIGYYSMILGLGSTAG QALGGLIITANLGGLSWRPAFLINVPIGIVLLLYAPAVLPDLAGAKRRRLDLAGVALLTAAMLLVVVPLTFGHDAGWAAW VWVALAAGVAGLAVFLRFEHGLARRGAAPLLDLDALLAPGIRPGLAVVSIGFIGYGGWLFACALYLQTGLGDSPMISGFV FAAYAFGFGISNVSWSKLPARLLRFTPAAALAVMVVANAAFGTGARQFGWLAALMVPLLFLAGASHGLTFGTTVSQMTQR TAARHAPALSGLVSTSVQLSIVIGVAALGSVYLAIARPGDVPRSAQAISSVTFAIAALALVAIACSLRLATMRAAPPAAV PAARPGGDAPRPH >Mature_492_residues SNSSTLAPGAAAPVRPHRRMLPLLLIGQGMAAMDTSIVNVAAPALRADLGISGALLQLVVAGYILAYAVFLITGARLGDD HGYRRLFIHGLAIFTISSLACGLAPDTWLLIAGRLAQGVGAAMLVPQVMSLIQRSYEGRERARAIGYYSMILGLGSTAGQ ALGGLIITANLGGLSWRPAFLINVPIGIVLLLYAPAVLPDLAGAKRRRLDLAGVALLTAAMLLVVVPLTFGHDAGWAAWV WVALAAGVAGLAVFLRFEHGLARRGAAPLLDLDALLAPGIRPGLAVVSIGFIGYGGWLFACALYLQTGLGDSPMISGFVF AAYAFGFGISNVSWSKLPARLLRFTPAAALAVMVVANAAFGTGARQFGWLAALMVPLLFLAGASHGLTFGTTVSQMTQRT AARHAPALSGLVSTSVQLSIVIGVAALGSVYLAIARPGDVPRSAQAISSVTFAIAALALVAIACSLRLATMRAAPPAAVP AARPGGDAPRPH
Specific function: Promotes the efflux of actinorhodin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI1790195, Length=407, Percent_Identity=29.4840294840295, Blast_Score=123, Evalue=3e-29, Organism=Escherichia coli, GI87081983, Length=306, Percent_Identity=31.6993464052288, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI1788392, Length=420, Percent_Identity=28.3333333333333, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1788710, Length=298, Percent_Identity=27.8523489932886, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1789042, Length=268, Percent_Identity=27.9850746268657, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324954, Length=412, Percent_Identity=24.7572815533981, Blast_Score=77, Evalue=8e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 50669; Mature: 50537
Theoretical pI: Translated: 11.18; Mature: 11.18
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSSTLAPGAAAPVRPHRRMLPLLLIGQGMAAMDTSIVNVAAPALRADLGISGALLQLV CCCCCCCCCCCCCCCCCHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VAGYILAYAVFLITGARLGDDHGYRRLFIHGLAIFTISSLACGLAPDTWLLIAGRLAQGV HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC GAAMLVPQVMSLIQRSYEGRERARAIGYYSMILGLGSTAGQALGGLIITANLGGLSWRPA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCCCCCCE FLINVPIGIVLLLYAPAVLPDLAGAKRRRLDLAGVALLTAAMLLVVVPLTFGHDAGWAAW EEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH VWVALAAGVAGLAVFLRFEHGLARRGAAPLLDLDALLAPGIRPGLAVVSIGFIGYGGWLF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHH ACALYLQTGLGDSPMISGFVFAAYAFGFGISNVSWSKLPARLLRFTPAAALAVMVVANAA HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHH FGTGARQFGWLAALMVPLLFLAGASHGLTFGTTVSQMTQRTAARHAPALSGLVSTSVQLS CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHH IVIGVAALGSVYLAIARPGDVPRSAQAISSVTFAIAALALVAIACSLRLATMRAAPPAAV HHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PAARPGGDAPRPH CCCCCCCCCCCCC >Mature Secondary Structure SNSSTLAPGAAAPVRPHRRMLPLLLIGQGMAAMDTSIVNVAAPALRADLGISGALLQLV CCCCCCCCCCCCCCCCHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VAGYILAYAVFLITGARLGDDHGYRRLFIHGLAIFTISSLACGLAPDTWLLIAGRLAQGV HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC GAAMLVPQVMSLIQRSYEGRERARAIGYYSMILGLGSTAGQALGGLIITANLGGLSWRPA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCEEEEEECCCCCCCCE FLINVPIGIVLLLYAPAVLPDLAGAKRRRLDLAGVALLTAAMLLVVVPLTFGHDAGWAAW EEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH VWVALAAGVAGLAVFLRFEHGLARRGAAPLLDLDALLAPGIRPGLAVVSIGFIGYGGWLF HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHH ACALYLQTGLGDSPMISGFVFAAYAFGFGISNVSWSKLPARLLRFTPAAALAVMVVANAA HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHH FGTGARQFGWLAALMVPLLFLAGASHGLTFGTTVSQMTQRTAARHAPALSGLVSTSVQLS CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHH IVIGVAALGSVYLAIARPGDVPRSAQAISSVTFAIAALALVAIACSLRLATMRAAPPAAV HHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PAARPGGDAPRPH CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; drug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + drug [Cytoplasm] = Proton [Cytoplasm] + drug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1878971; 12000953 [H]