Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is fdxA [H]

Identifier: 238027280

GI number: 238027280

Start: 1834945

End: 1835280

Strand: Direct

Name: fdxA [H]

Synonym: bglu_1g16670

Alternate gene names: 238027280

Gene position: 1834945-1835280 (Clockwise)

Preceding gene: 238027279

Following gene: 238027281

Centisome position: 46.97

GC content: 63.99

Gene sequence:

>336_bases
ATGACCTATGTCGTGACCGAGAACTGCATCCAGTGCAAGCACACCGATTGCGTCGACGTGTGTCCCGTCGACTGCTTTCA
CGAAGGCGAGAACTTCCTCGCGATCGATCCCGACGAATGCATCGACTGCGGCGTGTGCGAACCCGAATGCCCGGTGGACG
CGATCCGCCAGGACAGCGCACTCGCCCCCGAGCAGCGCATCTTCCTCGACCTGAACCGCGAGCTGGCGCAGAACTGGCCC
AGCATCACCAGCAAGCGGGCGGCACTGCCCGACGCCGCGCGCTGGAAGGACGTCGAGGGCAAGCTCGAACACCTGAAGCG
CGACGTGATCGCGTAA

Upstream 100 bases:

>100_bases
GCGAGACAGGAGCCGGCTGCCCGCCACACCCGACAGCAGAACCCGCAACGCAACCAACGCCTCACCCCAGCGAACCCTCA
TCGTCCCCAGGAGAAATTCG

Downstream 100 bases:

>100_bases
GGCGAGGGAGCCGGCATGTCGAATTCCTCCACCCTCGCGCCGGGCGCCGCCGCCCCGGTCCGGCCGCATCGCCGCATGCT
GCCGCTGCTGCTGATCGGGC

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: NA

Alternate protein names: Ferredoxin I; FdI [H]

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MTYVVTENCIQCKHTDCVDVCPVDCFHEGENFLAIDPDECIDCGVCEPECPVDAIRQDSALAPEQRIFLDLNRELAQNWP
SITSKRAALPDAARWKDVEGKLEHLKRDVIA

Sequences:

>Translated_111_residues
MTYVVTENCIQCKHTDCVDVCPVDCFHEGENFLAIDPDECIDCGVCEPECPVDAIRQDSALAPEQRIFLDLNRELAQNWP
SITSKRAALPDAARWKDVEGKLEHLKRDVIA
>Mature_110_residues
TYVVTENCIQCKHTDCVDVCPVDCFHEGENFLAIDPDECIDCGVCEPECPVDAIRQDSALAPEQRIFLDLNRELAQNWPS
ITSKRAALPDAARWKDVEGKLEHLKRDVIA

Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. This ferredoxin could play a role in regulating gene expression by interacting directly with DNA [H]

COG id: COG1146

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR000813
- InterPro:   IPR022569 [H]

Pfam domain/function: PF11953 DUF3470 [H]

EC number: NA

Molecular weight: Translated: 12502; Mature: 12371

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.1 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
9.0 %Cys+Met (Translated Protein)
8.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYVVTENCIQCKHTDCVDVCPVDCFHEGENFLAIDPDECIDCGVCEPECPVDAIRQDSA
CEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEECHHHHCCCCCCCCCCCHHHHCCCCC
LAPEQRIFLDLNRELAQNWPSITSKRAALPDAARWKDVEGKLEHLKRDVIA
CCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TYVVTENCIQCKHTDCVDVCPVDCFHEGENFLAIDPDECIDCGVCEPECPVDAIRQDSA
EEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEECHHHHCCCCCCCCCCCHHHHCCCCC
LAPEQRIFLDLNRELAQNWPSITSKRAALPDAARWKDVEGKLEHLKRDVIA
CCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2826477; 8244942; 6848518; 7120409; 3422475; 2926817; 9600844; 10387068; 10593945; 1855590; 2153958; 1657971; 8132582 [H]