| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238027169
Identifier: 238027169
GI number: 238027169
Start: 1708501
End: 1710096
Strand: Direct
Name: 238027169
Synonym: bglu_1g15550
Alternate gene names: NA
Gene position: 1708501-1710096 (Clockwise)
Preceding gene: 238027168
Following gene: 238027170
Centisome position: 43.73
GC content: 65.85
Gene sequence:
>1596_bases ATGCCCATCCCGTTCCCGTTCGACTTCCGCGCACCGGACTATGTGCAGGTGTTCGAATGGCGAGCGGAGCGCCTGCAGCG CATCCGCGCGAACCCAGGCGTGCTGCCGGCGCTGCGAGCCTTCTACCGCGACAACCCGGCCCAGTTCATCATCGACTGGG GCATGACTTTCGATCCGCGGAACGTCGAGCGCGGGCTGCCGGCCACGATCCCGTTCCTGCTTTTCCCCAAGCAGGAGGAT TGGATCGCCTGGTTCATGGAGCGCTGGCGCGCGCGTGAGCCCGGCATCACCGAGAAGACGCGCGACATGGGGATGTCGTG GCTGACCGTCGGCCTCGCCGACACGATATGCCTGTTCCACGAAGGAGTTGCGGCCGGTTTCGGCTCGCGCAAGGAAGAGT ACGTCGACAAGATCGGCTCGCCGAAGAGCCTGTTCTGGAAGGCTCGCGAGTTTCTGCGGCTGCTGCCGGCCGAATTCCGC GGTTCGTGGGACATCGGCACGCATGCGCCGCACATGCGGATCATCTTCCCCGACACGGGGTCGGTGATCACCGGCGAGTC GGGCGACGGCATCGGTCGCGGCGATCGCGCGAGCTTCTACGTGGTTGATGAGTCAGCGTTCCTTGAGCGCCCGCAGCTGG TCGACGCGTCGCTGTCGGCGACGACGAACTGCCGGCAGGACATCTCGACGCCGAACGGCATGGGCAACTCGTTCGCGCAG CGCCGGCACAGCGGCAAGATCAAGGTGTTCACCTTTCACTGGCGCGATGACCCGCGCAAGGACGACGCCTGGTACGCGAA ACAGGTGGCCGAGTTGGATCCGGTCGTCGTTGCTCAGGAAATCGACATCAACTACGCGGCGTCCGTCGAGGGCGTCGTGA TTCCGTCCGCCTGGGTGCAGGCGGCGCTCGGAGCGCACGTCAAGCTTGGCATCTCGCCGAGCGGCGCGCGCCGCGGCGGC CTCGACGTTGCCGACGAGGGCAAGGACAAGAACGCGTTCGCCGGGCGTTACGGCTTCCTGCTCGAACATCTCGAATCCTG GTCCGGTGTCGGGGGCGACATTTTCGGCACGGTCGACCGCGCGCTCGGCATCTGCGACGTGCGGGGCTATGAGGTGTTCG ACTACGACGCCGATGGGCTCGGCGCCGGCGTGCGCGGCGACGCGCGCGTGTTGAACGAGCAGCGCGCGGCGGCCGGCAAG CGGTCGATCCGCAGCGAGCCGTTCCGCGGCTCCGGTCCGGTGTACGACCCGGACGGGGAGATGGTGAAGGAGCGGAAGAA CAAGGACTACTTCGCGAACCTGAAGGCGCAGTCGTGGTGGGCACTGCGCCTGCGCTTTCAGGCGACGTATCGCGCGGTGG TGGAAGGGAAGCCATTCGATCCGGACGAGATCATCTCGATCGATCCGGATCTACCTGAGCGCGCGGCGCTGAGCATGGAA CTGTCGCAGCCGACTTTCACCGTCAACGGCGTCGGCAAGATTGTGATCGACAAGGCGCCCGACGGAACAAAGTCACCGAA CCTCGCGGACGCGGTGATGATTGCCTATCAGCCCGCCGCGCGCAGCATTGACATCTGGAAGAGGTTGGCAGGATGA
Upstream 100 bases:
>100_bases CACACCGGCAGGGGCGGCGGCCCGATCACGGCCATCTCGACGCAGACGAACGATCCGATGGAGGCGGCCAAGATCTACGC CGAGCTCATGAAGCCATAGC
Downstream 100 bases:
>100_bases GTCGAAAGAACCGAAGCGGTGCGCGAGGCGCGCCCGCGACTCGTCCGTCGACGGCCAGCATCCGCACGTCCGATTCGTTC GCCAATTTTCAAGCGCGGCT
Product: bacteriophage TerL protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 531; Mature: 530
Protein sequence:
>531_residues MPIPFPFDFRAPDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPRNVERGLPATIPFLLFPKQED WIAWFMERWRAREPGITEKTRDMGMSWLTVGLADTICLFHEGVAAGFGSRKEEYVDKIGSPKSLFWKAREFLRLLPAEFR GSWDIGTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCRQDISTPNGMGNSFAQ RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAELDPVVVAQEIDINYAASVEGVVIPSAWVQAALGAHVKLGISPSGARRGG LDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTVDRALGICDVRGYEVFDYDADGLGAGVRGDARVLNEQRAAAGK RSIRSEPFRGSGPVYDPDGEMVKERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALSME LSQPTFTVNGVGKIVIDKAPDGTKSPNLADAVMIAYQPAARSIDIWKRLAG
Sequences:
>Translated_531_residues MPIPFPFDFRAPDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPRNVERGLPATIPFLLFPKQED WIAWFMERWRAREPGITEKTRDMGMSWLTVGLADTICLFHEGVAAGFGSRKEEYVDKIGSPKSLFWKAREFLRLLPAEFR GSWDIGTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCRQDISTPNGMGNSFAQ RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAELDPVVVAQEIDINYAASVEGVVIPSAWVQAALGAHVKLGISPSGARRGG LDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTVDRALGICDVRGYEVFDYDADGLGAGVRGDARVLNEQRAAAGK RSIRSEPFRGSGPVYDPDGEMVKERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALSME LSQPTFTVNGVGKIVIDKAPDGTKSPNLADAVMIAYQPAARSIDIWKRLAG >Mature_530_residues PIPFPFDFRAPDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPRNVERGLPATIPFLLFPKQEDW IAWFMERWRAREPGITEKTRDMGMSWLTVGLADTICLFHEGVAAGFGSRKEEYVDKIGSPKSLFWKAREFLRLLPAEFRG SWDIGTHAPHMRIIFPDTGSVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCRQDISTPNGMGNSFAQR RHSGKIKVFTFHWRDDPRKDDAWYAKQVAELDPVVVAQEIDINYAASVEGVVIPSAWVQAALGAHVKLGISPSGARRGGL DVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTVDRALGICDVRGYEVFDYDADGLGAGVRGDARVLNEQRAAAGKR SIRSEPFRGSGPVYDPDGEMVKERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALSMEL SQPTFTVNGVGKIVIDKAPDGTKSPNLADAVMIAYQPAARSIDIWKRLAG
Specific function: Unknown
COG id: COG1783
COG function: function code R; Phage terminase large subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006701 - InterPro: IPR006437 [H]
Pfam domain/function: PF04466 Terminase_3 [H]
EC number: NA
Molecular weight: Translated: 59156; Mature: 59025
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIPFPFDFRAPDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPR CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCCC NVERGLPATIPFLLFPKQEDWIAWFMERWRAREPGITEKTRDMGMSWLTVGLADTICLFH CCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHH EGVAAGFGSRKEEYVDKIGSPKSLFWKAREFLRLLPAEFRGSWDIGTHAPHMRIIFPDTG HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC SVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCRQDISTPNGMGNSFAQ CEEECCCCCCCCCCCCEEEEEEECHHHHCCCCCCCCHHHCCCHHHHHCCCCCCCCHHHHH RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAELDPVVVAQEIDINYAASVEGVVIPSAWVQ HHHCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEECCCCCEEECHHHHH AALGAHVKLGISPSGARRGGLDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTVDR HHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH ALGICDVRGYEVFDYDADGLGAGVRGDARVLNEQRAAAGKRSIRSEPFRGSGPVYDPDGE HCCEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH MVKERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALSME HHHHHCCCCEEEECCCCCEEEEEEEEEEEEEHEECCCCCCCCCEEEECCCCCCHHEEEEE LSQPTFTVNGVGKIVIDKAPDGTKSPNLADAVMIAYQPAARSIDIWKRLAG ECCCEEEECCCEEEEEECCCCCCCCCCHHHEEEEEECCCCCHHHHHHHHCC >Mature Secondary Structure PIPFPFDFRAPDYVQVFEWRAERLQRIRANPGVLPALRAFYRDNPAQFIIDWGMTFDPR CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCCCC NVERGLPATIPFLLFPKQEDWIAWFMERWRAREPGITEKTRDMGMSWLTVGLADTICLFH CCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHH EGVAAGFGSRKEEYVDKIGSPKSLFWKAREFLRLLPAEFRGSWDIGTHAPHMRIIFPDTG HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCC SVITGESGDGIGRGDRASFYVVDESAFLERPQLVDASLSATTNCRQDISTPNGMGNSFAQ CEEECCCCCCCCCCCCEEEEEEECHHHHCCCCCCCCHHHCCCHHHHHCCCCCCCCHHHHH RRHSGKIKVFTFHWRDDPRKDDAWYAKQVAELDPVVVAQEIDINYAASVEGVVIPSAWVQ HHHCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCEEECCCCCEEECHHHHH AALGAHVKLGISPSGARRGGLDVADEGKDKNAFAGRYGFLLEHLESWSGVGGDIFGTVDR HHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH ALGICDVRGYEVFDYDADGLGAGVRGDARVLNEQRAAAGKRSIRSEPFRGSGPVYDPDGE HCCEEECCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH MVKERKNKDYFANLKAQSWWALRLRFQATYRAVVEGKPFDPDEIISIDPDLPERAALSME HHHHHCCCCEEEECCCCCEEEEEEEEEEEEEHEECCCCCCCCCEEEECCCCCCHHEEEEE LSQPTFTVNGVGKIVIDKAPDGTKSPNLADAVMIAYQPAARSIDIWKRLAG ECCCEEEECCCEEEEEECCCCCCCCCCHHHEEEEEECCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]