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The map label for this gene is hfq [H]

Identifier: 238027076

GI number: 238027076

Start: 1601676

End: 1601930

Strand: Direct

Name: hfq [H]

Synonym: bglu_1g14550

Alternate gene names: 238027076

Gene position: 1601676-1601930 (Clockwise)

Preceding gene: 238027075

Following gene: 238027077

Centisome position: 41.0

GC content: 56.47

Gene sequence:

>255_bases
ATGGAGTACGCCATGAGCAACAAAGGGCAATTGTTACAAGACCCGTTTTTGAACGCACTGCGTAAGGAACACGTGCCGGT
GTCGATCTACCTCGTCAACGGCATCAAGCTGCAAGGGAACATCGAATCGTTCGACCAGTACGTCGTGTTGCTCCGGAACA
CGGTTACCCAGATGGTCTACAAGCACGCCATCTCCACGGTCGTGCCGGCCCGCCCGGTGAATTTCCACCCGGATGCGGAA
GGCGCGTCCTCCTAA

Upstream 100 bases:

>100_bases
GCCGGCCAGCGAAGGCGGCTGGCAAAATCGGCTATAGTGTAGCGATTGACGGCGGATCTCTTTTTCTTCGCCGACAATCT
AGTTCAACCTGCAAAAAAAG

Downstream 100 bases:

>100_bases
CCCGATTGCCGCGGCTGGCGCCCGTCGCCGCCGGCGATCCACGCCAGCCGCCTTATCTTGACACCCGCCAATTTGACCAA
CGCCGCATTAGTGGGCATCG

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MEYAMSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAE
GASS

Sequences:

>Translated_84_residues
MEYAMSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAE
GASS
>Mature_84_residues
MEYAMSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDAE
GASS

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=77, Percent_Identity=76.6233766233766, Blast_Score=129, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 9401; Mature: 9401

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYAMSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVY
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHH
KHAISTVVPARPVNFHPDAEGASS
HHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEYAMSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVY
CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHH
KHAISTVVPARPVNFHPDAEGASS
HHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA