Click here to switch to the map view.

The map label for this gene is ybiO [H]

Identifier: 238026740

GI number: 238026740

Start: 1204622

End: 1207111

Strand: Reverse

Name: ybiO [H]

Synonym: bglu_1g10980

Alternate gene names: 238026740

Gene position: 1207111-1204622 (Counterclockwise)

Preceding gene: 238026744

Following gene: 238026738

Centisome position: 30.9

GC content: 73.05

Gene sequence:

>2490_bases
GTGCTCACGCCGCAGCAGGCGCAACAGGCGCTCTCGGTACTCGAAAATCCGCGCCAGCGCGCGCAATTCGAATCGACGCT
GCGCGCGATCGCCGCCGCCGGGGCGCTCAGCACGCCCGCCGTGCCGGCCAGCGCCGCCCATGCGGCCCCCGCCGCGAGCG
CGGCATCGGCCGCCTCGAGCCCCACCGCGTTCCTCAGCAACGGACTCGCCTCGCAGCTGATGCATCAGGGCTCGCACTGG
GCCGCGCAGATCGGCCGCGCGCTGCGCGACTCGATGCGCTCGCTGCTCGACGTGGGCTCGGTGGGCGCCTGGTGGCGCGC
GAAGCTCACCCATGCCGACGAGCGCGCAGATTTCGTCAGCTTCCTGCAATTGATCGTCGCGGCGCTGGCGCCCGCGCTGC
TGATCGAATGGTTTGCGCGCCGGCTGTTGCGGCGCGCGCTCGCGGCACTGGCCGCGCGCCGCGCCGGCGGCGGCCCGGCC
GGCGAGCCGTCGGCCGGGGCCTCGCACGCGTCGGCCGACGGCTCGCCGGAGCCGGCCGCGGCCGCGGCCGACGCCGCCGC
GCTCGCCGCGGCCGGCACCGGCGCGAGCCCCGCGCCGCCGCCCGACGCGGCCGATCAAGCGCGGCGCGCGGAACTCGCCT
CGCGCGGGCGCGGCCAGGCGCTGCGCCACAGCACGCTGCTGCAACGCGTGCCGCGCGCGCTGGTGAGCCTCGCGCTGCGT
GCGGTTTCGCTGCTGCTGTTCGTCGGCGTGGCGACCCTGATGATGTCGATCGTGACCGACGACGACACCCCCGCCGCCCT
CGCGATCGGCTCGCTGGTGGACATCTACGTGATCTGCCGCGCGGTGACCATCGGCTCGCGGCTGTTCTTCCAGCCCGACG
CGCCGCAGCTGCGGCTGCTGCATATCGGCGACACCTGGGCCGCGTTCGCGCAGCGATGGATCCGCCGCATCGTGCTGGTG
ATCGGCGGCTGCTCGGCGGTGGTCGAGACGGCCGGCAGCTTCGGCCTCAGCGACGCGGGCCATGTCGCGCTGATGAAGGC
GGTGGCGCTGGTCGGCCACGTGATGGTGTCGATCCTGATCCTGCAGTGCAGCCGGCCGGTGGCCGCCTGGATTCGCGCGC
AGAGCGCCGGGCGGCCGTCGCTCGCAGTGTTCGGCAACGCGCTCGCCGACGCCTGGGCGCCGGTGGCGATCTTCGTCGTG
ATGGCGCTCTGGTTCGTCTGGGCGCTCGACGTCCACAACGGCTACCACGTGCTGATCGCGCTCGGCGGGCGCTCGATCGC
GGTGATGATCGGCATGCGCATCGTCTCGATCGTGGTGTTCGGCGCGCTCGTGCGCCTGTTCGAGCGGCACGGCGACGACC
ACGGCACGGTGGTGCATCGCCATGCCTACCGCTACTACCCGCTGCTGCGGCAGGTGGTGTCCGTCCTGGTCGGCATCGTC
ACGCTGCTGCTGTTGCTGCAGATCTGGGGCGTGCCGGTGATGCGCGCGTTCGAGGCCGGCACCATCGGCCATCGCCTCGC
CTCCGCGCTGGTGACGATCGCGATCGCGGCGCTGGTCGCGCTGCTGGTGTGGGAGAGCGCGAACATCTCGATCGAGCGGC
GCCTCGACCGCTGGACCCACCAGGGCAACCTGATGCGCGCCGCGCGGCTGCGCACGCTGCTGCCGATGCTGCGCACGCTG
CTGTTCGTGCTGATCGCGCTGGTGGTGGTGCTGACCGGCCTGAGCGAGCTGGGCGTCAACGTCGGGCCGCTGCTGGCCGG
CGCGAGCATCTTCGGCGTGGCGCTCGGCTTCGGCTCGCAGAAGCTGGTGCAGGATTTCATCACCGGCATCTTCCTGCTGA
TGGAGAACGCGATGCAGGTGGGCGACTGGGTCACGCTGGCGGGCGTGTCGGGCACCGTCGAATACCTGTCGATCCGCACC
GTGCGGCTGCGCGCCAGCGACGGCTCGCTGCACACGGTGCCGTTCAGCTCGGTGTCCACCGTCAACAACACCAATCGCGG
GCTCGGCAACGCGGCGGTGAAGGTCAGCATCCTCCACAGCGAGGACATCGACCGCGCGGTCGAAACGCTCAAGGAGATCG
GCGCCGCGCTGCGCGAGGACCCCAAGTACAAGGACGGCATCCTGTCGGATTTCGCGTACTGGGGCGTCGATTCGGTGGAC
GGCGCGGCGATCACCATGTCGGGCCAGATGCAGTGCCGCGACAGCGGACGCTGGGGCGTGCAGCGCGAGTTCAACCGGCG
CATCGCCGTGCTGTTCGCCGAGCGCGGCATCCGCATCGCGAACCCGCAGCGCACCGTCTACGCGCGCGACCCGGGCGAGG
CCGGCGATGACGACCGGCGCGGCGAGGCCGGCGACGGCCCGCACGACGGCCGGCCTGAGGCGCGCAGCGGGCCGCCGCCG
GCCGGCGGCGCGGACGCGTCGTCGGCCCGCGAGCAGGCCGGCAAGCCCTCCGCGGCCGCGCCCGACGCGCCGCCGCCGAG
CAAATCCTGA

Upstream 100 bases:

>100_bases
CCCAACATGCGACAGATCCTTTTCGGCTGGCTGCTCGCCATCGTCGTCACGTCGGCCCCAGGCGGCCGCGCCCGCCGCGG
CCTCGGCCCCGGCAGTACCG

Downstream 100 bases:

>100_bases
CGCTGCCGCGCTTCGGCCCGCGTTGGCGCGCGCCGCCCGCCGACGCGGGGCAGCCCGGCGTGATGACCTGCGCGGTGGCC
TCGCCGAAGCCCGCGGCGCG

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 829; Mature: 829

Protein sequence:

>829_residues
MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASSPTAFLSNGLASQLMHQGSHW
AAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVSFLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPA
GEPSAGASHASADGSPEPAAAAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR
AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLLHIGDTWAAFAQRWIRRIVLV
IGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILILQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVV
MALWFVWALDVHNGYHVLIALGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV
TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTHQGNLMRAARLRTLLPMLRTL
LFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQKLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRT
VRLRASDGSLHTVPFSSVSTVNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD
GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRRGEAGDGPHDGRPEARSGPPP
AGGADASSAREQAGKPSAAAPDAPPPSKS

Sequences:

>Translated_829_residues
MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASSPTAFLSNGLASQLMHQGSHW
AAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVSFLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPA
GEPSAGASHASADGSPEPAAAAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR
AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLLHIGDTWAAFAQRWIRRIVLV
IGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILILQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVV
MALWFVWALDVHNGYHVLIALGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV
TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTHQGNLMRAARLRTLLPMLRTL
LFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQKLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRT
VRLRASDGSLHTVPFSSVSTVNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD
GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRRGEAGDGPHDGRPEARSGPPP
AGGADASSAREQAGKPSAAAPDAPPPSKS
>Mature_829_residues
MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASSPTAFLSNGLASQLMHQGSHW
AAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVSFLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPA
GEPSAGASHASADGSPEPAAAAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR
AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLLHIGDTWAAFAQRWIRRIVLV
IGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILILQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVV
MALWFVWALDVHNGYHVLIALGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV
TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTHQGNLMRAARLRTLLPMLRTL
LFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQKLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRT
VRLRASDGSLHTVPFSSVSTVNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD
GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRRGEAGDGPHDGRPEARSGPPP
AGGADASSAREQAGKPSAAAPDAPPPSKS

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=490, Percent_Identity=28.7755102040816, Blast_Score=157, Evalue=3e-39,
Organism=Escherichia coli, GI1786670, Length=236, Percent_Identity=26.271186440678, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 87396; Mature: 87396

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASS
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHCCCC
PTAFLSNGLASQLMHQGSHWAAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVS
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
FLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPAGEPSAGASHASADGSPEPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
AAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEE
HIGDTWAAFAQRWIRRIVLVIGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILI
EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVVMALWFVWALDVHNGYHVLIA
HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
LGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTH
HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
QGNLMRAARLRTLLPMLRTLLFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHCCCCH
KLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRTVRLRASDGSLHTVPFSSVST
HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEEEEEECCCCEEECCCCCHHH
VNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD
CCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRR
CCEEEECCCEEECCCCCCCCHHHHCCCEEEEEHHCCCEEECCCCEEEECCCCCCCCCCCC
GEAGDGPHDGRPEARSGPPPAGGADASSAREQAGKPSAAAPDAPPPSKS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTPQQAQQALSVLENPRQRAQFESTLRAIAAAGALSTPAVPASAAHAAPAASAASAASS
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHCCCC
PTAFLSNGLASQLMHQGSHWAAQIGRALRDSMRSLLDVGSVGAWWRAKLTHADERADFVS
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHH
FLQLIVAALAPALLIEWFARRLLRRALAALAARRAGGGPAGEPSAGASHASADGSPEPAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
AAADAAALAAAGTGASPAPPPDAADQARRAELASRGRGQALRHSTLLQRVPRALVSLALR
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
AVSLLLFVGVATLMMSIVTDDDTPAALAIGSLVDIYVICRAVTIGSRLFFQPDAPQLRLL
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEE
HIGDTWAAFAQRWIRRIVLVIGGCSAVVETAGSFGLSDAGHVALMKAVALVGHVMVSILI
EECCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LQCSRPVAAWIRAQSAGRPSLAVFGNALADAWAPVAIFVVMALWFVWALDVHNGYHVLIA
HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
LGGRSIAVMIGMRIVSIVVFGALVRLFERHGDDHGTVVHRHAYRYYPLLRQVVSVLVGIV
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
TLLLLLQIWGVPVMRAFEAGTIGHRLASALVTIAIAALVALLVWESANISIERRLDRWTH
HHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
QGNLMRAARLRTLLPMLRTLLFVLIALVVVLTGLSELGVNVGPLLAGASIFGVALGFGSQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHCCCCH
KLVQDFITGIFLLMENAMQVGDWVTLAGVSGTVEYLSIRTVRLRASDGSLHTVPFSSVST
HHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCEEEEEEEEEEECCCCEEECCCCCHHH
VNNTNRGLGNAAVKVSILHSEDIDRAVETLKEIGAALREDPKYKDGILSDFAYWGVDSVD
CCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCC
GAAITMSGQMQCRDSGRWGVQREFNRRIAVLFAERGIRIANPQRTVYARDPGEAGDDDRR
CCEEEECCCEEECCCCCCCCHHHHCCCEEEEEHHCCCEEECCCCEEEECCCCCCCCCCCC
GEAGDGPHDGRPEARSGPPPAGGADASSAREQAGKPSAAAPDAPPPSKS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]