Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

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The map label for this gene is dtd [H]

Identifier: 238026241

GI number: 238026241

Start: 603350

End: 603808

Strand: Direct

Name: dtd [H]

Synonym: bglu_1g05740

Alternate gene names: 238026241

Gene position: 603350-603808 (Clockwise)

Preceding gene: 238026240

Following gene: 238026242

Centisome position: 15.44

GC content: 72.77

Gene sequence:

>459_bases
ATGATCGCGCTGATCCAGCGCGTGCGGCGCGCCGACGTGCGCGTCGGCGAGCGCGTGACCGGGCAGATCGGCGCGGGCCT
GCTCGCGCTCGTCTGCGCCGAGCGCGACGACACCGAGGCACAGGCCGACAAGCTGCTCGCGAAAGTGCTCGGCTACCGCG
TGTTCAGCGACGCGGCCGGCAAGATGAACCTGCCCGTCACGAATCTCGACGGCGCGGGCACGGCGGGCGGCCTGCTGCTC
GTCTCGCAGTTCACGCTCGCGGCCGACACCCGCAGCGGCATGCGGCCGAGCTTCACGCCAGCCGCCCCGCCCGAAGCAGG
CGCGCGGCTGTTCGCCTACTTCGTCGAAGCGGCGCGGGCGCGGCACCCGATCGTCGAGACCGGCGAGTTCGGCGCCGAGA
TGCAGGTCTCGCTCGTCAACGACGGGCCCGTCACGTTCTGGCTGCAGGCTCGCGCCTGA

Upstream 100 bases:

>100_bases
TCGACGGCACCACCGTTTCCGACAAGGGCCTCAAGGTCGAGGCGGGCGAGTACGTGGTTCAAGTCGGCAAGCGGCGCTTC
GCGCGCGTGACGGTCGGCGC

Downstream 100 bases:

>100_bases
CAGGCCGGCGCGCGACGGACCCGCGCCGGCCGGCTGCCGCGCCCGCTCGGCTCACTGCTTCGCTTCTTCGCATTCCGATC
GGCCAACCGATGACCACGAC

Product: D-tyrosyl-tRNA(Tyr) deacylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAGKMNLPVTNLDGAGTAGGLLL
VSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARARHPIVETGEFGAEMQVSLVNDGPVTFWLQARA

Sequences:

>Translated_152_residues
MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAGKMNLPVTNLDGAGTAGGLLL
VSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARARHPIVETGEFGAEMQVSLVNDGPVTFWLQARA
>Mature_152_residues
MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAGKMNLPVTNLDGAGTAGGLLL
VSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARARHPIVETGEFGAEMQVSLVNDGPVTFWLQARA

Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine [H]

COG id: COG1490

COG function: function code J; D-Tyr-tRNAtyr deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DTD family [H]

Homologues:

Organism=Homo sapiens, GI30795227, Length=154, Percent_Identity=37.012987012987, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1790320, Length=149, Percent_Identity=61.0738255033557, Blast_Score=175, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI115533292, Length=154, Percent_Identity=37.6623376623377, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6319982, Length=152, Percent_Identity=38.8157894736842, Blast_Score=96, Evalue=3e-21,
Organism=Drosophila melanogaster, GI281361569, Length=152, Percent_Identity=34.8684210526316, Blast_Score=79, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003732 [H]

Pfam domain/function: PF02580 Tyr_Deacylase [H]

EC number: NA

Molecular weight: Translated: 16115; Mature: 16115

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAG
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
KMNLPVTNLDGAGTAGGLLLVSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARA
CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RHPIVETGEFGAEMQVSLVNDGPVTFWLQARA
CCCCCCCCCCCCEEEEEEECCCCEEEEEEECC
>Mature Secondary Structure
MIALIQRVRRADVRVGERVTGQIGAGLLALVCAERDDTEAQADKLLAKVLGYRVFSDAAG
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
KMNLPVTNLDGAGTAGGLLLVSQFTLAADTRSGMRPSFTPAAPPEAGARLFAYFVEAARA
CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
RHPIVETGEFGAEMQVSLVNDGPVTFWLQARA
CCCCCCCCCCCCEEEEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA