Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is 238026060

Identifier: 238026060

GI number: 238026060

Start: 400575

End: 401219

Strand: Direct

Name: 238026060

Synonym: bglu_1g03880

Alternate gene names: NA

Gene position: 400575-401219 (Clockwise)

Preceding gene: 238026056

Following gene: 238026061

Centisome position: 10.25

GC content: 71.16

Gene sequence:

>645_bases
ATGAAAGACCGACTGTTCGCAAAACTCTCCGTAGTGGTGATGGCATGTGGTGTGATCGCAGGTTGCGCAACGCAGCCCTC
GGCTCCGCCGACACCCGAGGCGTTCAACAAATCGCTCGAGGACGCGGACGCGGTCGCGAAGGCGGGAGACCAGGACAAGG
CGATCGGCCTCTACCAGCAGCTCGCGAAGTCCGACCCGACGCGCGAGGAGCCGTGGGCGCGCATCGCGCAGATCCAGTTC
CAGCAAGGCCATTACGGCCAGGCCATCGTCGCGGCGCAGGAAGCGCTGCAGCGTGACAACACCGACCGCCAGTCGAAGAG
CGTGCTGGCCGTGGCGGGGCTGCGCATCGCCACCGAATCGCTGAGCGAGCTGCGCCAGGATTCGTCGCTGGCCGGCGACG
CGAAGTCCGACGCGCAGGTGCTGGCCAAGCAGTTGCGCGACACCCTCGGCGAGGACGCGCTGTTCCCGCCCGAGCAGGCC
GACAAGCCCCAGCCGAAGCGCCGCAAGGTCTACCGCAGGCACGTCGCGCGCGAGGCGGCGCCGGCTGCCGCGGCACCGGC
GGCCGAGGCACCGAAGCCGGCCGCGCCGGCGGCACCGGCGGCCCCGGCCAAGGGCGGCGCCGACCCGTTCAGCGCGCTGC
GCTGA

Upstream 100 bases:

>100_bases
TGAATTATGAAAAATTGATCGGTACTATACCCGCGCACTAGCACCAAAGCAAAACTACTGAAACTCAACGATTTAAAACT
CCGCGCCCGGTGATAAAACG

Downstream 100 bases:

>100_bases
GCACCCCGCACGCCCACTACCACACGTTATCGGGAGAGCCGTCATGGCAAAAAAAGAAAGTATCCAGAAACGCCTGCAAA
AGGTGCGGCCGCCCCGCGTG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: TPR Repeat-Containing Protein; TPR Repeat; TPR Repeat Protein; Tetratricopeptide Repeat Family Protein; Tetratricopeptide Repeat-Containing Protein

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQLAKSDPTREEPWARIAQIQF
QQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATESLSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQA
DKPQPKRRKVYRRHVAREAAPAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR

Sequences:

>Translated_214_residues
MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQLAKSDPTREEPWARIAQIQF
QQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATESLSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQA
DKPQPKRRKVYRRHVAREAAPAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR
>Mature_214_residues
MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQLAKSDPTREEPWARIAQIQF
QQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATESLSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQA
DKPQPKRRKVYRRHVAREAAPAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22584; Mature: 22584

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LAKSDPTREEPWARIAQIQFQQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATES
HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQADKPQPKRRKVYRRHVAREAA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
PAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MKDRLFAKLSVVVMACGVIAGCATQPSAPPTPEAFNKSLEDADAVAKAGDQDKAIGLYQQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LAKSDPTREEPWARIAQIQFQQGHYGQAIVAAQEALQRDNTDRQSKSVLAVAGLRIATES
HHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LSELRQDSSLAGDAKSDAQVLAKQLRDTLGEDALFPPEQADKPQPKRRKVYRRHVAREAA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
PAAAAPAAEAPKPAAPAAPAAPAKGGADPFSALR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA