| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238025876
Identifier: 238025876
GI number: 238025876
Start: 212133
End: 213587
Strand: Reverse
Name: 238025876
Synonym: bglu_1g02020
Alternate gene names: NA
Gene position: 213587-212133 (Counterclockwise)
Preceding gene: 238025877
Following gene: 238025851
Centisome position: 5.47
GC content: 74.23
Gene sequence:
>1455_bases GTGCAGGACGATTACCCGAACTACGATGCCACTGACCTCGCCGCGCTGATCGCCACCCGGCGGGCCAGCGCGCGCGAGGT GCTCGACGCCGCGATCGCGCGCGCCAACGCACTGAATCCGTCGATCAACGCGATCGTGCTGACCGACTACGACGCGGCCC GCGAGCGGGCCGCCGCGCCGCCGGCCGGCCCGCTCGGCGGCGTGCCCTATCTCGTCAAGGATCTCGCGGCGGCAGCCGGG CTGAGGATGTCGCTCGGCAGCCGCCACTACCGCTACTTCGTGCCCGACGCCGACGCGCCGTTCATCGCGCGTGCGAAGGC GGCCGGCGCCAATGTGTTCGGCAAGACCAGCACCGCCGAATTCGGCCAGATGCCGGTGACCGAGCCCGAGCTGTTCGGGC CGTGCCGCAACCCCTGGAATCTCGATCACACGCCGGGCGGCTCGAGCGGCGGCGCGGCGGCGGCCGTGGCGGCCGGCATC GTGCCGCTCGCGCATGCGTCCGACGGCGGCGGCTCGATCCGCATCCCCGCCTCGTGCTGCGGCCTGTTCGGCTTCAAGCC CGGCTACGATCCGCAACTGGCGGCGCAGCCCGTGCCGGGCGACCTGATCGTCAACCATGCGATCTCGCGCAGCGTGCGCG ACAGCGCGCTGCTGTTCGACCTCACCACGGGGCGCGCCGGCACCTCCGAGGCCACGCTCGCGCGGCTCGACGAACCGGTG GGGGCGCTGCGCATCGGCCTCGTCACCGATCCGCTGTTCGCGGCGGCGCTGTCGCCCGACGTGCTGGCGGCGCTCGACGA CGCGGCTAGGCTAGCCGAATCGCTCGGCCACGTGGTGGAGCCGATGAGGCTGCCGATCGACCAGGCGCGCGCGGCCGAGA CCTTCCTCACCTGCTGGGCCGCCATCGTCGAGCCGCTGGTCCACGACGCGCAGGCGCTCACGGGGCGCCGGCCGCGCGGC GACGAGTTCGAGCCGGCGAGCCGCGCGATGGCGCAGGTCGGGCGGCATCTCGCGCGCGAGCGTCTGCCGCTCGCGCGCGA CTGGCAAAAACAGCTGATCGCGCAGGTGGAGAGCGCCACCGCACGCTACGACCTGGTGCTGTGCGCGACGCTGGCGGCAC CGCCCGTGCGGATCGGCGAGCTGCGCTCCACGCCGTTCGAGCGCGCGCAAATGCGCCTGCTCGCCGCCCTGCCGGCGCGG CCGCTGCTGCGCATGATGCTCGCGAACACGGCCAAGCGCGCGTTCGCCTGGGCCGGCTGCACCGAGCTGTTCAACCTCAC CGGCCAGCCGGCGATGTCGGTGCCGCTGCACTGGAACGCACGCGGCCTGCCGGTCGGCGTGCAGTTCGCCGCGCGCCGCG GCGACGACGCGCGGCTGCTGCGATTCGCGCGCCAGCTCGAACTCGCGCGGCCGTGGTTCGCGCGGCGTCCGCCGCTGGTG CCGGCGGCGCGCTAA
Upstream 100 bases:
>100_bases ACCGGCCCGCGCGGGCCGGCGTCCGCACGCGCTGGCCGGCCGCCGGCGCGACGCCGGCGCCGCGCGTGGCCCGATTCCGA CTCGAACAACGGGGGCCGCG
Downstream 100 bases:
>100_bases AGCACCGGCGCCGCGGCTCGCGCCGACGAGCGCGGGCCGCGCCGGGCCCCGTGCCTGGGGTGGGCGCGGCCGTTGCGGCG GCAACGGCCGTGCATGAAAA
Product: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MQDDYPNYDATDLAALIATRRASAREVLDAAIARANALNPSINAIVLTDYDAARERAAAPPAGPLGGVPYLVKDLAAAAG LRMSLGSRHYRYFVPDADAPFIARAKAAGANVFGKTSTAEFGQMPVTEPELFGPCRNPWNLDHTPGGSSGGAAAAVAAGI VPLAHASDGGGSIRIPASCCGLFGFKPGYDPQLAAQPVPGDLIVNHAISRSVRDSALLFDLTTGRAGTSEATLARLDEPV GALRIGLVTDPLFAAALSPDVLAALDDAARLAESLGHVVEPMRLPIDQARAAETFLTCWAAIVEPLVHDAQALTGRRPRG DEFEPASRAMAQVGRHLARERLPLARDWQKQLIAQVESATARYDLVLCATLAAPPVRIGELRSTPFERAQMRLLAALPAR PLLRMMLANTAKRAFAWAGCTELFNLTGQPAMSVPLHWNARGLPVGVQFAARRGDDARLLRFARQLELARPWFARRPPLV PAAR
Sequences:
>Translated_484_residues MQDDYPNYDATDLAALIATRRASAREVLDAAIARANALNPSINAIVLTDYDAARERAAAPPAGPLGGVPYLVKDLAAAAG LRMSLGSRHYRYFVPDADAPFIARAKAAGANVFGKTSTAEFGQMPVTEPELFGPCRNPWNLDHTPGGSSGGAAAAVAAGI VPLAHASDGGGSIRIPASCCGLFGFKPGYDPQLAAQPVPGDLIVNHAISRSVRDSALLFDLTTGRAGTSEATLARLDEPV GALRIGLVTDPLFAAALSPDVLAALDDAARLAESLGHVVEPMRLPIDQARAAETFLTCWAAIVEPLVHDAQALTGRRPRG DEFEPASRAMAQVGRHLARERLPLARDWQKQLIAQVESATARYDLVLCATLAAPPVRIGELRSTPFERAQMRLLAALPAR PLLRMMLANTAKRAFAWAGCTELFNLTGQPAMSVPLHWNARGLPVGVQFAARRGDDARLLRFARQLELARPWFARRPPLV PAAR >Mature_484_residues MQDDYPNYDATDLAALIATRRASAREVLDAAIARANALNPSINAIVLTDYDAARERAAAPPAGPLGGVPYLVKDLAAAAG LRMSLGSRHYRYFVPDADAPFIARAKAAGANVFGKTSTAEFGQMPVTEPELFGPCRNPWNLDHTPGGSSGGAAAAVAAGI VPLAHASDGGGSIRIPASCCGLFGFKPGYDPQLAAQPVPGDLIVNHAISRSVRDSALLFDLTTGRAGTSEATLARLDEPV GALRIGLVTDPLFAAALSPDVLAALDDAARLAESLGHVVEPMRLPIDQARAAETFLTCWAAIVEPLVHDAQALTGRRPRG DEFEPASRAMAQVGRHLARERLPLARDWQKQLIAQVESATARYDLVLCATLAAPPVRIGELRSTPFERAQMRLLAALPAR PLLRMMLANTAKRAFAWAGCTELFNLTGQPAMSVPLHWNARGLPVGVQFAARRGDDARLLRFARQLELARPWFARRPPLV PAAR
Specific function: Unknown
COG id: COG0154
COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amidase family [H]
Homologues:
Organism=Homo sapiens, GI195972892, Length=193, Percent_Identity=33.6787564766839, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI222831590, Length=470, Percent_Identity=25.531914893617, Blast_Score=92, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17537465, Length=499, Percent_Identity=24.4488977955912, Blast_Score=99, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17543272, Length=467, Percent_Identity=24.4111349036403, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17556264, Length=474, Percent_Identity=25.7383966244726, Blast_Score=92, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17556276, Length=296, Percent_Identity=27.7027027027027, Blast_Score=75, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17556278, Length=296, Percent_Identity=27.7027027027027, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24648435, Length=490, Percent_Identity=25.5102040816327, Blast_Score=117, Evalue=3e-26, Organism=Drosophila melanogaster, GI24648437, Length=490, Percent_Identity=25.5102040816327, Blast_Score=117, Evalue=3e-26, Organism=Drosophila melanogaster, GI45550774, Length=490, Percent_Identity=25.5102040816327, Blast_Score=116, Evalue=3e-26, Organism=Drosophila melanogaster, GI161078093, Length=513, Percent_Identity=24.9512670565302, Blast_Score=110, Evalue=2e-24, Organism=Drosophila melanogaster, GI24644968, Length=243, Percent_Identity=30.0411522633745, Blast_Score=96, Evalue=5e-20, Organism=Drosophila melanogaster, GI24648113, Length=456, Percent_Identity=28.5087719298246, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI21356731, Length=192, Percent_Identity=32.8125, Blast_Score=90, Evalue=4e-18, Organism=Drosophila melanogaster, GI24648441, Length=421, Percent_Identity=24.2280285035629, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24648439, Length=421, Percent_Identity=24.2280285035629, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI24652985, Length=315, Percent_Identity=28.2539682539683, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI19922090, Length=315, Percent_Identity=28.2539682539683, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI24652981, Length=315, Percent_Identity=28.2539682539683, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI24652983, Length=315, Percent_Identity=28.2539682539683, Blast_Score=79, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000120 - InterPro: IPR020556 [H]
Pfam domain/function: PF01425 Amidase [H]
EC number: =3.5.1.4 [H]
Molecular weight: Translated: 51515; Mature: 51515
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: PS00571 AMIDASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDDYPNYDATDLAALIATRRASAREVLDAAIARANALNPSINAIVLTDYDAARERAAAP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCC PAGPLGGVPYLVKDLAAAAGLRMSLGSRHYRYFVPDADAPFIARAKAAGANVFGKTSTAE CCCCCCCCHHHHHHHHHHHCHHHHCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCHH FGQMPVTEPELFGPCRNPWNLDHTPGGSSGGAAAAVAAGIVPLAHASDGGGSIRIPASCC HCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCEEEECHHHH GLFGFKPGYDPQLAAQPVPGDLIVNHAISRSVRDSALLFDLTTGRAGTSEATLARLDEPV HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCC GALRIGLVTDPLFAAALSPDVLAALDDAARLAESLGHVVEPMRLPIDQARAAETFLTCWA CCEEEHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH AIVEPLVHDAQALTGRRPRGDEFEPASRAMAQVGRHLARERLPLARDWQKQLIAQVESAT HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ARYDLVLCATLAAPPVRIGELRSTPFERAQMRLLAALPARPLLRMMLANTAKRAFAWAGC HHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH TELFNLTGQPAMSVPLHWNARGLPVGVQFAARRGDDARLLRFARQLELARPWFARRPPLV HHHHHCCCCCCEECCEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCC PAAR CCCC >Mature Secondary Structure MQDDYPNYDATDLAALIATRRASAREVLDAAIARANALNPSINAIVLTDYDAARERAAAP CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCCC PAGPLGGVPYLVKDLAAAAGLRMSLGSRHYRYFVPDADAPFIARAKAAGANVFGKTSTAE CCCCCCCCHHHHHHHHHHHCHHHHCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCHH FGQMPVTEPELFGPCRNPWNLDHTPGGSSGGAAAAVAAGIVPLAHASDGGGSIRIPASCC HCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCEEEECHHHH GLFGFKPGYDPQLAAQPVPGDLIVNHAISRSVRDSALLFDLTTGRAGTSEATLARLDEPV HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHCCCC GALRIGLVTDPLFAAALSPDVLAALDDAARLAESLGHVVEPMRLPIDQARAAETFLTCWA CCEEEHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH AIVEPLVHDAQALTGRRPRGDEFEPASRAMAQVGRHLARERLPLARDWQKQLIAQVESAT HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ARYDLVLCATLAAPPVRIGELRSTPFERAQMRLLAALPARPLLRMMLANTAKRAFAWAGC HHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH TELFNLTGQPAMSVPLHWNARGLPVGVQFAARRGDDARLLRFARQLELARPWFARRPPLV HHHHHCCCCCCEECCEEECCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCCCCC PAAR CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]