| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is yceH [C]
Identifier: 238025228
GI number: 238025228
Start: 2369439
End: 2370161
Strand: Direct
Name: yceH [C]
Synonym: bglu_2g18990
Alternate gene names: 238025228
Gene position: 2369439-2370161 (Clockwise)
Preceding gene: 238025227
Following gene: 238025231
Centisome position: 83.8
GC content: 73.58
Gene sequence:
>723_bases ATGACCACTTCCACCGAAGCCCCCACCCCGCGCCCGCTGCGCGCGCTCACCCCGCTCGAGGCACGCATCGTCGGCGTGCT GGTCGAGAAGCAGCACACCGTGCCGGACACCTATCCGCTCTCGCTGAACGCGCTCGCGGCCGGCTGCAGCCAGAAGACCG CGCGCTCGCCCGTGATGAGCGTGAGCGAGGCCGAGGTGCTGCGCGCGATCGAGGACCTGAAGCAGGTCAGCCTCGTGTTC GAGGGCAGCAGCAGCCGCGTGCCGCGCTTCGAGCACAACCTGAACCGCGTGCTCGGCATCCCGAGCCAGGCCGTGGCGCT GTTGACCGTGCTGCTGCTGCGCGGCGCGCAGACGGCCGCCGAGCTGCGGCTCAATTCGGCACGGCTGCACGGCTTCGCCG ACGTCTCGTCGGTGGAGAGCTTCCTCGACGAGCTGGCCGAGCGCAGCCCGCCGCTGGTCGTGAAGCTGCCGCGCGCGCCG GGCGAACGCGAGAGCCGCTGGATGCACCTGTTGTGCGGCGAGCTCAGCGCGGCCGCGCATGCGCCGGCCGCCGCGCGCGC TGCCGGCGAGGCCGGCGGCGAACCGTCCGCGGGTGTCTGCGCGGCCGATTTCGAGGCGCTGCGCGACGATCACGACCGGC TCGCCGGTGAGGTCGCGCGGCTGCGCCGGCTGGTCGAGCGGATGGCGGACGAACTGGGGATCGACGCCGGCGCGGCGGAC TGA
Upstream 100 bases:
>100_bases TTCCGCGGGCCGGGCCGCGCCTGGCTGGCCGAGCGCGCAAGCGTATATCATCGCAGCAGCAGATTGCCTGCTTTCCGCCA CTTTCGACTGACGCAGCCCG
Downstream 100 bases:
>100_bases GCCCGCCGCGCGCGGCCCCCAAGGAGGCACCGCCCCGGCCGGCGCACGAGCGGCCTCACGGCGCGCGGCCTGCACCGCGA GCGGCGCCCTCGTTGCGCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MTTSTEAPTPRPLRALTPLEARIVGVLVEKQHTVPDTYPLSLNALAAGCSQKTARSPVMSVSEAEVLRAIEDLKQVSLVF EGSSSRVPRFEHNLNRVLGIPSQAVALLTVLLLRGAQTAAELRLNSARLHGFADVSSVESFLDELAERSPPLVVKLPRAP GERESRWMHLLCGELSAAAHAPAAARAAGEAGGEPSAGVCAADFEALRDDHDRLAGEVARLRRLVERMADELGIDAGAAD
Sequences:
>Translated_240_residues MTTSTEAPTPRPLRALTPLEARIVGVLVEKQHTVPDTYPLSLNALAAGCSQKTARSPVMSVSEAEVLRAIEDLKQVSLVF EGSSSRVPRFEHNLNRVLGIPSQAVALLTVLLLRGAQTAAELRLNSARLHGFADVSSVESFLDELAERSPPLVVKLPRAP GERESRWMHLLCGELSAAAHAPAAARAAGEAGGEPSAGVCAADFEALRDDHDRLAGEVARLRRLVERMADELGIDAGAAD >Mature_239_residues TTSTEAPTPRPLRALTPLEARIVGVLVEKQHTVPDTYPLSLNALAAGCSQKTARSPVMSVSEAEVLRAIEDLKQVSLVFE GSSSRVPRFEHNLNRVLGIPSQAVALLTVLLLRGAQTAAELRLNSARLHGFADVSSVESFLDELAERSPPLVVKLPRAPG ERESRWMHLLCGELSAAAHAPAAARAAGEAGGEPSAGVCAADFEALRDDHDRLAGEVARLRRLVERMADELGIDAGAAD
Specific function: Unknown
COG id: COG3132
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0502 family [H]
Homologues:
Organism=Escherichia coli, GI1787306, Length=197, Percent_Identity=43.1472081218274, Blast_Score=150, Evalue=8e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007432 - InterPro: IPR011991 [H]
Pfam domain/function: PF04337 DUF480 [H]
EC number: NA
Molecular weight: Translated: 25519; Mature: 25388
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSTEAPTPRPLRALTPLEARIVGVLVEKQHTVPDTYPLSLNALAAGCSQKTARSPVMS CCCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHCCHHHH VSEAEVLRAIEDLKQVSLVFEGSSSRVPRFEHNLNRVLGIPSQAVALLTVLLLRGAQTAA HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHH ELRLNSARLHGFADVSSVESFLDELAERSPPLVVKLPRAPGERESRWMHLLCGELSAAAH HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHC APAAARAAGEAGGEPSAGVCAADFEALRDDHDRLAGEVARLRRLVERMADELGIDAGAAD CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TTSTEAPTPRPLRALTPLEARIVGVLVEKQHTVPDTYPLSLNALAAGCSQKTARSPVMS CCCCCCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCHHHHCCHHHH VSEAEVLRAIEDLKQVSLVFEGSSSRVPRFEHNLNRVLGIPSQAVALLTVLLLRGAQTAA HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHH ELRLNSARLHGFADVSSVESFLDELAERSPPLVVKLPRAPGERESRWMHLLCGELSAAAH HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHC APAAARAAGEAGGEPSAGVCAADFEALRDDHDRLAGEVARLRRLVERMADELGIDAGAAD CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA