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The map label for this gene is cmpR [H]

Identifier: 238025227

GI number: 238025227

Start: 2368365

End: 2369273

Strand: Direct

Name: cmpR [H]

Synonym: bglu_2g18980

Alternate gene names: 238025227

Gene position: 2368365-2369273 (Clockwise)

Preceding gene: 238025222

Following gene: 238025228

Centisome position: 83.77

GC content: 68.76

Gene sequence:

>909_bases
ATGACCGATACCCTCACCGACAGCCGCATCGTCTATTTCTACGAGGCCGTGCGCTGCGGCACGATCCGCGCGGCGGCCGA
CTGGCTCGACGTGGCGCCGTCGGCCGTGAGCCGCCAGATCGGGCTGCTCGAGAAGGAGCTCGACGCCACCCTGGTGGAGC
GCCATGCGCGCGGTGTCACGCCCACCGCGGCGGGGCGCTGCGTGATCGAGTATTTCCGCGAGCAGCTCGCGCACCGCGAC
GACCTGCTCTCGCAACTGCAGGAGCTGCGCGGGCTCAAGACCGGACAGGTCGGCGTGGTGCTCGGCGAGGGCTTCGTCTC
GGACCTGCTGGCCGGGCCGATGCAGCAGTTCTGCCGGCAGTACCCGGGCATCCACGTCAATCTCGACGTGGGCAGCACCA
ACGACGTGATCCGCAAGATCTCGAACGACGAGGGCGAGATCGGCCTCGTCTACAACCCGCCCGACGAGCCGAAGCTGGTG
TCGCGCGCCACCCAGCGCCAGCCGATGATGGCGATCGTCGGCCCCGGCTTCCCGCGCCGCACCCACAAGGTGCTCACGGT
GCAGCAGCTGGCCGGCTATCCGCTCGCGGCCCCGCATCCGTCCTACGGCACGCGGCAGATGCTGGAGGCCGTCGAATACG
CCGAGCGCGTGCGGCTCGCGCCGGTCGTCACGACCAATTCGTTCGCGATCCTCAAGGACTTCGTGAAATCGGGGCTCGGC
ATCGCGGTGATGCCGGCGTTCGCGGTGGCGGCCGAGCTGCAGGCCAAGCAGTTGTTCGCGATCGAGATCGCGCACCCGAT
CCTCGAGAACGCCGAGGCGCACATGGTCACGCGCGTGGGGCGCAAGCTGTCGGTGGCGGCCAACAAGATGCTGCAGATGA
TGACGGGGCAGATGCGGGCGTTTCGCTGA

Upstream 100 bases:

>100_bases
CGTGCCGGCACCGCATGTCGATGCGATGTTGCGGCGGCGGACTCGTATAATCAATCAACGCCAATATTGAAACTGTTCTG
TTTTTTAGAACACGCGACCG

Downstream 100 bases:

>100_bases
GGTGCCGGGCGGGCTTCGGGCGCGGCGCGCGGCCCGCCCGGCGTGGCGCGCGCAGCTCGCGCCGTTTCCGCGGGCCGGGC
CGCGCCTGGCTGGCCGAGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTDTLTDSRIVYFYEAVRCGTIRAAADWLDVAPSAVSRQIGLLEKELDATLVERHARGVTPTAAGRCVIEYFREQLAHRD
DLLSQLQELRGLKTGQVGVVLGEGFVSDLLAGPMQQFCRQYPGIHVNLDVGSTNDVIRKISNDEGEIGLVYNPPDEPKLV
SRATQRQPMMAIVGPGFPRRTHKVLTVQQLAGYPLAAPHPSYGTRQMLEAVEYAERVRLAPVVTTNSFAILKDFVKSGLG
IAVMPAFAVAAELQAKQLFAIEIAHPILENAEAHMVTRVGRKLSVAANKMLQMMTGQMRAFR

Sequences:

>Translated_302_residues
MTDTLTDSRIVYFYEAVRCGTIRAAADWLDVAPSAVSRQIGLLEKELDATLVERHARGVTPTAAGRCVIEYFREQLAHRD
DLLSQLQELRGLKTGQVGVVLGEGFVSDLLAGPMQQFCRQYPGIHVNLDVGSTNDVIRKISNDEGEIGLVYNPPDEPKLV
SRATQRQPMMAIVGPGFPRRTHKVLTVQQLAGYPLAAPHPSYGTRQMLEAVEYAERVRLAPVVTTNSFAILKDFVKSGLG
IAVMPAFAVAAELQAKQLFAIEIAHPILENAEAHMVTRVGRKLSVAANKMLQMMTGQMRAFR
>Mature_301_residues
TDTLTDSRIVYFYEAVRCGTIRAAADWLDVAPSAVSRQIGLLEKELDATLVERHARGVTPTAAGRCVIEYFREQLAHRDD
LLSQLQELRGLKTGQVGVVLGEGFVSDLLAGPMQQFCRQYPGIHVNLDVGSTNDVIRKISNDEGEIGLVYNPPDEPKLVS
RATQRQPMMAIVGPGFPRRTHKVLTVQQLAGYPLAAPHPSYGTRQMLEAVEYAERVRLAPVVTTNSFAILKDFVKSGLGI
AVMPAFAVAAELQAKQLFAIEIAHPILENAEAHMVTRVGRKLSVAANKMLQMMTGQMRAFR

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=286, Percent_Identity=24.8251748251748, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=241, Percent_Identity=25.3112033195021, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=230, Percent_Identity=23.0434782608696, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787879, Length=231, Percent_Identity=26.4069264069264, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082132, Length=253, Percent_Identity=22.1343873517787, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789204, Length=240, Percent_Identity=23.75, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788481, Length=259, Percent_Identity=22.7799227799228, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789639, Length=123, Percent_Identity=30.0813008130081, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787601, Length=278, Percent_Identity=23.7410071942446, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33209; Mature: 33078

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTLTDSRIVYFYEAVRCGTIRAAADWLDVAPSAVSRQIGLLEKELDATLVERHARGVT
CCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PTAAGRCVIEYFREQLAHRDDLLSQLQELRGLKTGQVGVVLGEGFVSDLLAGPMQQFCRQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
YPGIHVNLDVGSTNDVIRKISNDEGEIGLVYNPPDEPKLVSRATQRQPMMAIVGPGFPRR
CCCEEEEEECCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCH
THKVLTVQQLAGYPLAAPHPSYGTRQMLEAVEYAERVRLAPVVTTNSFAILKDFVKSGLG
HHHHEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHEECEEEECCCHHHHHHHHHCCCC
IAVMPAFAVAAELQAKQLFAIEIAHPILENAEAHMVTRVGRKLSVAANKMLQMMTGQMRA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FR
CC
>Mature Secondary Structure 
TDTLTDSRIVYFYEAVRCGTIRAAADWLDVAPSAVSRQIGLLEKELDATLVERHARGVT
CCCCCCCEEEEEEHHHHHCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PTAAGRCVIEYFREQLAHRDDLLSQLQELRGLKTGQVGVVLGEGFVSDLLAGPMQQFCRQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHH
YPGIHVNLDVGSTNDVIRKISNDEGEIGLVYNPPDEPKLVSRATQRQPMMAIVGPGFPRR
CCCEEEEEECCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCCH
THKVLTVQQLAGYPLAAPHPSYGTRQMLEAVEYAERVRLAPVVTTNSFAILKDFVKSGLG
HHHHEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHEECEEEECCCHHHHHHHHHCCCC
IAVMPAFAVAAELQAKQLFAIEIAHPILENAEAHMVTRVGRKLSVAANKMLQMMTGQMRA
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]