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The map label for this gene is hcpA [H]

Identifier: 238024506

GI number: 238024506

Start: 1418865

End: 1419350

Strand: Direct

Name: hcpA [H]

Synonym: bglu_2g11090

Alternate gene names: 238024506

Gene position: 1418865-1419350 (Clockwise)

Preceding gene: 238024505

Following gene: 238024507

Centisome position: 50.18

GC content: 57.41

Gene sequence:

>486_bases
ATGGCAATTCCGGCCTATATGTGGCTCAAGGACGATGGCGGTGCCGACATCAAGGGTTCGGTGACGGTTCAGGGCCGAGA
AGGCAGCGTCGAGCTCGTCGCGTTCAATCACGGCGTGCACATCCCGACCGACGGCAACACGGGCAAGCTCACCGGTACGC
GTGTACACAAGCCGATTACGCTCACGAAGGAAACGGACGCGTCGACGCCATACCTGTACAAGGCCGTGACGAGCGGCCAG
ACGTTGAAGTCGGTCGAAATCAAGTGGTACAAGATCGACGACGCGGGCAAGGAGAAGGAGTACTTCAACACGAAGCTCGA
CAACGTCAAGATCGTGGCCGTCAACCCGGTGATGTACGACATCAAGAACCCGGACTACGAGAAACACAACCACCTCGAAA
ACGTCGAACTGCGCTACGAGACGATCACCTGGTCGTACAAGGACGGCAACATCATCCACAAGGACACCTGGAACGAGCGT
TCCTGA

Upstream 100 bases:

>100_bases
TGAAGGAACAGGCTTTAGCCCCGAAGCGCGCGCTTCGGGATTCCGAAGCTCGGGGGCTGGCTCCGGGCGGTTGTCGCAGT
ACATGAAAAGGAGTGAAGCA

Downstream 100 bases:

>100_bases
TAGCGGCACCGTGTGGTGGGACCGGCGCGCTGCGGCGGCCGGTCCCTTTACCAGCCCGTGGTCCGGGCTAGTCTTTTTCC
ACCTCGAAGCGGGCGCCCAG

Product: type VI secretion system effector, Hcp1 family

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQ
TLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNER
S

Sequences:

>Translated_161_residues
MAIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQ
TLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNER
S
>Mature_160_residues
AIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPITLTKETDASTPYLYKAVTSGQT
LKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYDIKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNERS

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18259; Mature: 18128

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPIT
CCCCEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCEEECCCCCCCCEECCEEECCEE
LTKETDASTPYLYKAVTSGQTLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYD
EEECCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCHHCCCCCCCEEEEEECCEEEE
IKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNERS
CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCC
>Mature Secondary Structure 
AIPAYMWLKDDGGADIKGSVTVQGREGSVELVAFNHGVHIPTDGNTGKLTGTRVHKPIT
CCCEEEEEECCCCCCEEEEEEEECCCCCEEEEEEECCEEECCCCCCCCEECCEEECCEE
LTKETDASTPYLYKAVTSGQTLKSVEIKWYKIDDAGKEKEYFNTKLDNVKIVAVNPVMYD
EEECCCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCCHHCCCCCCCEEEEEECCEEEE
IKNPDYEKHNHLENVELRYETITWSYKDGNIIHKDTWNERS
CCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]