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The map label for this gene is ybaO [H]

Identifier: 238024462

GI number: 238024462

Start: 1352002

End: 1352466

Strand: Direct

Name: ybaO [H]

Synonym: bglu_2g10580

Alternate gene names: 238024462

Gene position: 1352002-1352466 (Clockwise)

Preceding gene: 339717974

Following gene: 238024463

Centisome position: 47.82

GC content: 61.29

Gene sequence:

>465_bases
GTGATCGACCATATCGACAAAGCCATCCTGACCGTTCTGCAAGACGACTGCACGCTTCCCGTGGCGGAGCTTGCCGATCG
CGTGCATCTGTCGACCACGCCTTGCTGGCGCCGCATACAGAAGCTCGAGCAGGACGGCGTCATCGCCCGCCGCGTGGCCC
TGCTGGACGCCGAGAAGCTCAATGTGGGCGTCACCGTCTTCGTCGAGATCCGAACCGCCCAGCACACGGCCGCGTGGCTC
AAGCGCTTTTGCGAGGCGGTGGCCGATATTCCGGAAGTCGTCGAGGTGTACCGCATGAGCGGCCACGTCGACTATCTCCT
CAAGGTCGTGGTACCGCACATCGCCGCCTATGACGGTGTCTACAAGCGCTTGATCAGCGAGCTGGAAATCTTCGACGTCA
GTTCCAGCTTTTCGATGGAGACCATCAAGTCCACCACGAGCCTGCCGCTCGCCTACATTTCGTGA

Upstream 100 bases:

>100_bases
AATATTTTCGTTTCCCGGTGTCACTTTTCCCCCCTCGTTGCACAAGGTGAGTGAAGGCGTCCCATGTTCACGACGCCTAC
CTTGTCCCGAGGGGAGAACC

Downstream 100 bases:

>100_bases
CCCGGTGGTCTGAGGACTTGGCGTGTCGAACGGAATTTTCAGCGACGTCCCGTTCGCCGGGAATGAAATTCCAGAAATGG
CCGCAAATAGGAATTCTTTC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MIDHIDKAILTVLQDDCTLPVAELADRVHLSTTPCWRRIQKLEQDGVIARRVALLDAEKLNVGVTVFVEIRTAQHTAAWL
KRFCEAVADIPEVVEVYRMSGHVDYLLKVVVPHIAAYDGVYKRLISELEIFDVSSSFSMETIKSTTSLPLAYIS

Sequences:

>Translated_154_residues
MIDHIDKAILTVLQDDCTLPVAELADRVHLSTTPCWRRIQKLEQDGVIARRVALLDAEKLNVGVTVFVEIRTAQHTAAWL
KRFCEAVADIPEVVEVYRMSGHVDYLLKVVVPHIAAYDGVYKRLISELEIFDVSSSFSMETIKSTTSLPLAYIS
>Mature_154_residues
MIDHIDKAILTVLQDDCTLPVAELADRVHLSTTPCWRRIQKLEQDGVIARRVALLDAEKLNVGVTVFVEIRTAQHTAAWL
KRFCEAVADIPEVVEVYRMSGHVDYLLKVVVPHIAAYDGVYKRLISELEIFDVSSSFSMETIKSTTSLPLAYIS

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=49.0066225165563, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=35.8108108108108, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17313; Mature: 17313

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDHIDKAILTVLQDDCTLPVAELADRVHLSTTPCWRRIQKLEQDGVIARRVALLDAEKL
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHC
NVGVTVFVEIRTAQHTAAWLKRFCEAVADIPEVVEVYRMSGHVDYLLKVVVPHIAAYDGV
CCCEEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YKRLISELEIFDVSSSFSMETIKSTTSLPLAYIS
HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC
>Mature Secondary Structure
MIDHIDKAILTVLQDDCTLPVAELADRVHLSTTPCWRRIQKLEQDGVIARRVALLDAEKL
CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHC
NVGVTVFVEIRTAQHTAAWLKRFCEAVADIPEVVEVYRMSGHVDYLLKVVVPHIAAYDGV
CCCEEEEEEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YKRLISELEIFDVSSSFSMETIKSTTSLPLAYIS
HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]