| Definition | Burkholderia glumae BGR1 chromosome chromosome 2, complete sequence. |
|---|---|
| Accession | NC_012721 |
| Length | 2,827,333 |
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The map label for this gene is 238024401
Identifier: 238024401
GI number: 238024401
Start: 1264878
End: 1265768
Strand: Reverse
Name: 238024401
Synonym: bglu_2g09940
Alternate gene names: NA
Gene position: 1265768-1264878 (Counterclockwise)
Preceding gene: 238024402
Following gene: 339717970
Centisome position: 44.77
GC content: 67.12
Gene sequence:
>891_bases ATGAGCGACCGCACCATTGTTCCGATCGCGCGCATCCGCCATGACGGCAAGCGATCGCTGCGTGAAGTGATGAAGGGCCT CGACCGGCCCGCGGTACTGCAAGGCTTCATCGACGACTGGCCGGCACTGGCGCGCTGGACGCCGGAATTCTTCGTCGCGC AGCACGGCGGCCACGACATCACGGTCGAGACCTCGAGCCTCTGCCCGACGCCGACCCGTCCTGACCTTTACCTGGCCTCG CGACGCTACGAGAAAGCGCCGCTAGGCAAGACCATCCGCGAGATGCAGAGCCAGGGGGCAGCACGCACGGCCTACATCAC CTACGCCGAGATCTACGAGGCGATTCCGTCGCTGCGCGAAGACATCACGTTGCTGCACGAGCGATACGGCTTCCCGCGCT GGCTGCCGGACGGCCTGCGGCGCAGACTGATACTGCGGCCCGGTTTCTGGCTCGGCCCCGAGGGCATTTCCTCGCCGCTG CATTTCGACCGTCACGAGAACCTCAACGTGCAGGTATACGGCCGCAAGCGCTGGGTGCTGTTCGGGCCGGGGCAATCGCA CCAGGTCTATTACCGCCAGCGCCGTGACCTACCGGTGATTTTCAGCCCGGTCGACATGACGCGGCCCGACCTCGACGCCT TCCCCAGGCTAGGCGACGCGCAGCGTCACGACTTCGTGCTCGAGGCCGGCGAGGTGCTCTACCTGCCGCCCGGCTGGTGG CACTTCGTGACCTCGCTGAGCGACTCGATCAACGTCAACTACTGGTGGTGGTCGCCGCGCGCCCTGCGAACCTGGGCGCG CGTCGAACTGGCGAGCCTCGCCCAAGCGCTGGCGCGCCGCTTCGACCGCGGCACCGACGCAACGGGCAAACCCACTTCGA TGCCGCGCTGA
Upstream 100 bases:
>100_bases GCTGGCTGCCCGGCGACGTCTTGCGGCCGGGGCGGTGTGCGGCGCTCGCGATGCCGGCCGATGCCGGCCATGCCACCCAC GCCGTCCCGGAGAACGCATC
Downstream 100 bases:
>100_bases GGCGCCGCCCCCCCACATTCGAGCCCCCCATGCAAAACGAATTCGATTTCACCGTCATCGATGCGCTCTACGCATCCGGC TATCACGGGCCGCGCGCGCT
Product: transcription factor jumonji
Products: NA
Alternate protein names: Transcription Factor Jumonji Domain-Containing Protein; JmjC Domain-Containing Protein; Transcription Factor Jumonji JmjC Domain Protein; Pass1-Related Protein; Transcription Factor Jumonji/Aspartyl Beta-Hydroxylase; Transcription Factor Jumonji Jmjc DomaiN-Containing Protein; PASs1-Like Protein; JmjC Domain Protein; Transcription Factor Jumonji JmjC; Acetyltransferase; JmjC-Domain Protein; Transcription Factor Jumonji Jmjc Domain-Containing Protein; Transcription Factor Jumonji JmjC Protein; PASS1 Domain-Containing Protein; Peptide-Aspartate Beta-Dioxygenase; N-Acetyltransferase And Transcription Factor-Like Protein
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MSDRTIVPIARIRHDGKRSLREVMKGLDRPAVLQGFIDDWPALARWTPEFFVAQHGGHDITVETSSLCPTPTRPDLYLAS RRYEKAPLGKTIREMQSQGAARTAYITYAEIYEAIPSLREDITLLHERYGFPRWLPDGLRRRLILRPGFWLGPEGISSPL HFDRHENLNVQVYGRKRWVLFGPGQSHQVYYRQRRDLPVIFSPVDMTRPDLDAFPRLGDAQRHDFVLEAGEVLYLPPGWW HFVTSLSDSINVNYWWWSPRALRTWARVELASLAQALARRFDRGTDATGKPTSMPR
Sequences:
>Translated_296_residues MSDRTIVPIARIRHDGKRSLREVMKGLDRPAVLQGFIDDWPALARWTPEFFVAQHGGHDITVETSSLCPTPTRPDLYLAS RRYEKAPLGKTIREMQSQGAARTAYITYAEIYEAIPSLREDITLLHERYGFPRWLPDGLRRRLILRPGFWLGPEGISSPL HFDRHENLNVQVYGRKRWVLFGPGQSHQVYYRQRRDLPVIFSPVDMTRPDLDAFPRLGDAQRHDFVLEAGEVLYLPPGWW HFVTSLSDSINVNYWWWSPRALRTWARVELASLAQALARRFDRGTDATGKPTSMPR >Mature_295_residues SDRTIVPIARIRHDGKRSLREVMKGLDRPAVLQGFIDDWPALARWTPEFFVAQHGGHDITVETSSLCPTPTRPDLYLASR RYEKAPLGKTIREMQSQGAARTAYITYAEIYEAIPSLREDITLLHERYGFPRWLPDGLRRRLILRPGFWLGPEGISSPLH FDRHENLNVQVYGRKRWVLFGPGQSHQVYYRQRRDLPVIFSPVDMTRPDLDAFPRLGDAQRHDFVLEAGEVLYLPPGWWH FVTSLSDSINVNYWWWSPRALRTWARVELASLAQALARRFDRGTDATGKPTSMPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI223942014, Length=257, Percent_Identity=29.1828793774319, Blast_Score=111, Evalue=7e-25, Organism=Homo sapiens, GI223942018, Length=250, Percent_Identity=28, Blast_Score=111, Evalue=8e-25, Organism=Homo sapiens, GI21314714, Length=263, Percent_Identity=29.6577946768061, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI89242134, Length=260, Percent_Identity=22.3076923076923, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI167860114, Length=265, Percent_Identity=24.9056603773585, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI148596936, Length=151, Percent_Identity=31.1258278145695, Blast_Score=72, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17557716, Length=250, Percent_Identity=23.2, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI281365404, Length=234, Percent_Identity=28.2051282051282, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24650697, Length=114, Percent_Identity=35.9649122807018, Blast_Score=69, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34288; Mature: 34156
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDRTIVPIARIRHDGKRSLREVMKGLDRPAVLQGFIDDWPALARWTPEFFVAQHGGHDI CCCCEEEHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCHHEEEECCCCEE TVETSSLCPTPTRPDLYLASRRYEKAPLGKTIREMQSQGAARTAYITYAEIYEAIPSLRE EEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH DITLLHERYGFPRWLPDGLRRRLILRPGFWLGPEGISSPLHFDRHENLNVQVYGRKRWVL HHHHHHHHCCCCCCCCHHHHHEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEECEEEEE FGPGQSHQVYYRQRRDLPVIFSPVDMTRPDLDAFPRLGDAQRHDFVLEAGEVLYLPPGWW ECCCCCCHHHHHHCCCCCEEECCCCCCCCCHHHCCCCCCCCCCCEEEECCCEEEECCCHH HFVTSLSDSINVNYWWWSPRALRTWARVELASLAQALARRFDRGTDATGKPTSMPR HHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure SDRTIVPIARIRHDGKRSLREVMKGLDRPAVLQGFIDDWPALARWTPEFFVAQHGGHDI CCCEEEHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHCCCHHEEEECCCCEE TVETSSLCPTPTRPDLYLASRRYEKAPLGKTIREMQSQGAARTAYITYAEIYEAIPSLRE EEECCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH DITLLHERYGFPRWLPDGLRRRLILRPGFWLGPEGISSPLHFDRHENLNVQVYGRKRWVL HHHHHHHHCCCCCCCCHHHHHEEEECCCCEECCCCCCCCCCCCCCCCCCEEEEECEEEEE FGPGQSHQVYYRQRRDLPVIFSPVDMTRPDLDAFPRLGDAQRHDFVLEAGEVLYLPPGWW ECCCCCCHHHHHHCCCCCEEECCCCCCCCCHHHCCCCCCCCCCCEEEECCCEEEECCCHH HFVTSLSDSINVNYWWWSPRALRTWARVELASLAQALARRFDRGTDATGKPTSMPR HHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA